BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0010.p (336 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0789 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 288 9e-78 BH1083 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 220 3e-57 lin2072 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 215 7e-56 SA0603 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 201 1e-51 BS_fhuB [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 189 4e-48 >CAC0789 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 288 bits (737), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 142/308 (46%), Positives = 193/308 (62%) Query: 26 FLIAMIFGAKETTLHDLWLAVASGSLADNXXXXXXXXXXXXXXXXXIGAAFAVSGAIMQG 85 F++++I GA++ +L+D+WLAV+S N +GAA AVSGAIMQG Sbjct: 25 FILSLILGAEKVSLNDVWLAVSSSVKNGNINIIREIRLPREIAAVFVGAALAVSGAIMQG 84 Query: 86 VTRNPLADPGLLGLTSGANMALALTFVFLPGLNYFATMIACFXXXXXXXXXXXXXXXXRQ 145 V++NPLADPGLLGLT+GAN AL +T P NY +I+CF ++ Sbjct: 85 VSKNPLADPGLLGLTAGANAALTITITIAPSANYLTILISCFLGAAAAVVLVFGISFSKR 144 Query: 146 GGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKDVSMWTAGGLIGTTWGQLQTIAPVXX 205 GG SP+RIVLAG+AVS FL+AI+ G+ I FK+SKDVSMWT+GGLIGT+W +L I P Sbjct: 145 GGSSPLRIVLAGSAVSTFLFAISQGMQIYFKLSKDVSMWTSGGLIGTSWDELAVIIPFIT 204 Query: 206 XXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXXXXXXXXXXXTGASVALIGDMAFVGL 265 S+EVA+GLGQ+ GASVAL ++ F+GL Sbjct: 205 LGLATAFILSRQLTVLSLSEEVAVGLGQKTTPIKAILFVVVTILAGASVALASNLVFLGL 264 Query: 266 MIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTLGRTINAPYETPVVAVVAMLGLPFFL 325 M+PHI I+G DYR+++P+S +GA M+ +D LGR + +PYETPV A+++++GLPFFL Sbjct: 265 MVPHIAYFIIGKDYRFVIPISTVLGAALMVFSDILGRLVASPYETPVAAIISIIGLPFFL 324 Query: 326 FVVRKGGK 333 F+V KGGK Sbjct: 325 FIVHKGGK 332 >BH1083 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 338 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/264 (40%), Positives = 159/264 (60%) Query: 72 IGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYFATMIACFXXXX 131 +GA A+SGAIMQG+TRNPLA P +LGLT G+ +A+A+ F F+PG+++ TM F Sbjct: 75 VGACLAISGAIMQGMTRNPLASPSILGLTDGSTLAIAIAFAFIPGISFLQTMFMSFAGAG 134 Query: 132 XXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKDVSMWTAGGLIG 191 +G LSP+++ LAG A+ A L ++A+G++I F++++ VS W AGG+ G Sbjct: 135 VAAALVFSIVFLAKGQLSPVKLALAGVAIGALLDSLATGIAIHFQVAQHVSFWYAGGVAG 194 Query: 192 TTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXXXXXXXXXXXTG 251 T W Q+Q + PV DEVA+GLGQR TG Sbjct: 195 TNWTQIQFLVPVFLLGLFLSLFIARSITVLSLGDEVAVGLGQRTFFVRIVAILAVLLLTG 254 Query: 252 ASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTLGRTINAPYETP 311 A+V++ G + FVGL+IPH+ R +VG DYR +LP S GA ++LAD R +N P+ETP Sbjct: 255 AAVSVAGAVGFVGLIIPHVTRFLVGVDYRVVLPCSAVFGALLLVLADIGSRMVNPPFETP 314 Query: 312 VVAVVAMLGLPFFLFVVRKGGKAL 335 + A+ A++G+PFFL++ R+ + L Sbjct: 315 IGAITALVGVPFFLYLARRDRRGL 338 >lin2072 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 341 Score = 215 bits (548), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/264 (41%), Positives = 158/264 (59%) Query: 72 IGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYFATMIACFXXXX 131 IGAAFAV+GAIMQG+TRNPLAD GLLGL +G+ +A+ F F+P L+Y + +I F Sbjct: 78 IGAAFAVAGAIMQGITRNPLADSGLLGLNAGSTFMVAVCFAFMPWLSYNSLIIFSFVGAA 137 Query: 132 XXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKDVSMWTAGGLIG 191 +SP R+VLAGAAVS+ L A++ G++I F++S+D++ W AGG+ G Sbjct: 138 IGAFLVFGVSSIAGSAMSPTRLVLAGAAVSSLLTALSEGLAIYFQLSQDLAFWYAGGVAG 197 Query: 192 TTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXXXXXXXXXXXTG 251 W QL I P D++A+GLG++ G Sbjct: 198 VKWSQLAAIWPWLLGALIAAILLSKSITILSLGDDIAVGLGEKTTFVKIASMVVVLILAG 257 Query: 252 ASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTLGRTINAPYETP 311 +V+++G + F+GL++PH+VR +VG DYR+I+P S +GA L AD + RTIN PYETP Sbjct: 258 LAVSVVGPVGFIGLIVPHLVRFLVGVDYRFIIPCSAVVGAFLTLAADIVARTINPPYETP 317 Query: 312 VVAVVAMLGLPFFLFVVRKGGKAL 335 + + A++G+PFFL+V RK + L Sbjct: 318 ISVIFALIGVPFFLYVARKERRNL 341 >SA0603 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/264 (40%), Positives = 158/264 (59%), Gaps = 3/264 (1%) Query: 72 IGAAFAVSGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYFATMIACFXXXX 131 +G A AVSGAI+QGVTRN LADP L+GL SGA+ ALALT+ LP ++ M A F Sbjct: 74 VGMALAVSGAIIQGVTRNGLADPALIGLNSGASFALALTYAVLPNTSFLILMFAGFLGAI 133 Query: 132 XXXXXXXXXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKDVSMWTAGGLIG 191 R+ G +P+RI+LAGAAVSA L A++ G+++AF++++ V+ WTAGG+ G Sbjct: 134 LGGAIVLMIGRSRRDGFNPMRIILAGAAVSAMLTALSQGIALAFRLNQTVTFWTAGGVSG 193 Query: 192 TTWGQLQTIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXXXXXXXXXXXTG 251 TTW L+ P+ + +A GLGQ G Sbjct: 194 TTWSHLKWAIPLIGIALFIILTISKQLTILNLGESLAKGLGQNVTMIRGICLIIAMILAG 253 Query: 252 ASVALIGDMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTLGRTINAPYETP 311 +VA+ G +AFVGLM+PHI R ++GTDY ILP++ +G +L+AD + R + E P Sbjct: 254 IAVAIAGQVAFVGLMVPHIARFLIGTDYAKILPLTALLGGILVLVADVIARYLG---EAP 310 Query: 312 VVAVVAMLGLPFFLFVVRKGGKAL 335 V A+++ +G+P+FL++V+KGG+++ Sbjct: 311 VGAIISFIGVPYFLYLVKKGGRSI 334 >BS_fhuB [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 384 Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 148/257 (57%) Query: 79 SGAIMQGVTRNPLADPGLLGLTSGANMALALTFVFLPGLNYFATMIACFXXXXXXXXXXX 138 SGAIMQG+TRNPLA+P ++G+TSG+ A+++ F F PGL+ ++ F Sbjct: 128 SGAIMQGMTRNPLAEPSIMGVTSGSAFAVSIAFAFFPGLSAMGLVLWSFAGAGLGASTVM 187 Query: 139 XXXXXRQGGLSPIRIVLAGAAVSAFLYAIASGVSIAFKISKDVSMWTAGGLIGTTWGQLQ 198 +GGL+P+++ LAG AV+ F I++ ++I F +++D+S W AGG+ G W +Q Sbjct: 188 GIGMFSRGGLTPVKLALAGTAVTYFFTGISTAIAIRFDVAQDISFWYAGGVAGVKWSGVQ 247 Query: 199 TIAPVXXXXXXXXXXXXXXXXXXXXSDEVAIGLGQRXXXXXXXXXXXXXXXTGASVALIG 258 + D++A GLGQ TGA+V++ G Sbjct: 248 LLLIAGAVGLTLAFFIARSVTVLSLGDDLAKGLGQYTSAVKLVGMLIVVILTGAAVSIAG 307 Query: 259 DMAFVGLMIPHIVRKIVGTDYRYILPVSVFIGATFMLLADTLGRTINAPYETPVVAVVAM 318 +AF+GL+IPHI R +VG DYR+I+P S +GA ++ AD R +NAP+ETPV A+ ++ Sbjct: 308 TIAFIGLIIPHITRFLVGVDYRWIIPCSAVLGAVLLVFADIAARLVNAPFETPVGALTSL 367 Query: 319 LGLPFFLFVVRKGGKAL 335 +G+PFF ++ R+ + L Sbjct: 368 IGVPFFFYLARRERRGL 384 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,503,742 Number of extensions: 607158 Number of successful extensions: 2526 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 2237 Number of HSP's successfully gapped: 152 Length of query: 336 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 229 Effective length of database: 26,037,693 Effective search space: 5962631697 Effective search space used: 5962631697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)