BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0009.p (335 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0788 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 315 6e-86 SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 255 8e-68 BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 224 2e-58 BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 194 2e-49 lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 187 2e-47 >CAC0788 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 336 Score = 315 bits (808), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 156/307 (50%), Positives = 220/307 (71%) Query: 29 MGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILITXXXXXXXXXXXXXXQSVTRN 88 +G+G +LS++ L+P L G G+FK++FVLF +R PR+ IT Q++TRN Sbjct: 30 LGIGDYALSYNNLIPTLLGQGSFKDEFVLFDLRFPRMAITILSGMALALSGAVLQNITRN 89 Query: 89 DLADPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPLAAFIGAIMTATLIYLFSYSRTR 148 DLADPGIIGINSGAGVAV VFF+Y P+ + +F Y +P+ AFIGA++TA +IYL +Y + Sbjct: 90 DLADPGIIGINSGAGVAVTVFFMYMPIDSKTFSYLVPIIAFIGALITAVIIYLLAYKKNE 149 Query: 149 GLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAKWIAGNIWGTDYPFIWALLPWL 208 G+ P+R+VL+GVG S+ALSG+MIVI+S A+R+KVDFI+KW+AGN+WG D+ F+ A+ P + Sbjct: 150 GVQPLRLVLLGVGLSMALSGLMIVIMSLADRSKVDFISKWLAGNVWGLDWAFVLAIFPCI 209 Query: 209 VLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXXXXXXXXXXXXXXXTGGIAFIG 268 V+L+P+ L+KS+ LN++ L+ ++GVG+++E+ER TG I+FIG Sbjct: 210 VILVPYILYKSNTLNIIKLSRDVSIGVGMSIEKERFKLLMASVALSSFAVSVTGNISFIG 269 Query: 269 LMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRNIADPDGIPAGIMVSLIGVPYF 328 LMAPHIAK+LVG RNQMFIP+ DT+G+++ IPAGI+VS+IG PYF Sbjct: 270 LMAPHIAKALVGHRNQMFIPIAILMGGWLLLLADTIGQHLLQSGNIPAGIVVSVIGAPYF 329 Query: 329 AYLLLRK 335 YLLL+K Sbjct: 330 IYLLLKK 336 >SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 338 Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 128/334 (38%), Positives = 191/334 (57%) Query: 1 MTSSAPVRKQRXXXXXXXXXXXXTAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSV 60 M SS R+Q + G ++ +R L G G ++ +L Sbjct: 1 MISSNNKRRQLIALAVFSILLFLGCTWSITSGEYNIPVERFFKTLIGQGDAIDELILLDF 60 Query: 61 RLPRILITXXXXXXXXXXXXXXQSVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSF 120 RLPR++IT QSVT+N +A+PGI+GIN+G G A+A+F ++ +F Sbjct: 61 RLPRMMITILAGAALSISGAIVQSVTKNPIAEPGILGINAGGGFAIALFIAIGKINADNF 120 Query: 121 IYALPLAAFIGAIMTATLIYLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERA 180 +Y LPL + +G I TA +I++FS+++ G+ P MVL+GVG AL G I I+S + Sbjct: 121 VYVLPLISILGGITTALIIFIFSFNKNEGVTPASMVLIGVGLQTALYGGSITIMSKFDDK 180 Query: 181 KVDFIAKWIAGNIWGTDYPFIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLE 240 + DFIA W AGNIWG ++PF+ A LPW++++IP+ LFKS+ LN++ + A G+G+ L Sbjct: 181 QSDFIAAWFAGNIWGDEWPFVIAFLPWVLIIIPYLLFKSNTLNIIHTGDNIARGLGVRLS 240 Query: 241 RERXXXXXXXXXXXXXXXXXTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXX 300 RER G I+FIGLM PHIAK +VGPR+Q+F+P+ Sbjct: 241 RERLILFFIAVMLSSAAVAVAGSISFIGLMGPHIAKRIVGPRHQLFLPIAILVGACLLVI 300 Query: 301 XDTVGRNIADPDGIPAGIMVSLIGVPYFAYLLLR 334 DT+G+ + P G+PAGI+V++IG PYF YL+ + Sbjct: 301 ADTIGKIVLQPGGVPAGIVVAIIGAPYFLYLMYK 334 >BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 336 Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 182/310 (58%), Gaps = 6/310 (1%) Query: 29 MGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILITXXXXXXXXXXXXXXQSVTRN 88 + LG ++ + L V FG GT +++ VLF RLPRI+++ QSV++N Sbjct: 27 LNLGVIKIAPLKTLQVFFGQGTARDELVLFEFRLPRIILSLLVGAGISVAGAILQSVSQN 86 Query: 89 DLADPGIIGINSGAGVAVAVFFLYFPVSTGSF----IYALPLAAFIGAIMTATLIYLFSY 144 +LA+PGI+GIN+G +AV +F +F S + LP +A GAI+ A LIY+ ++ Sbjct: 87 ELAEPGILGINAGGSLAVVLFIYFFQGSASDLSFFGTFMLPFSALAGAILAAFLIYILAW 146 Query: 145 SRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAKWIAGNIWGTDYPFIWAL 204 + G+ PIR++LVG+G + + ++++ + A WI+G+IWG ++ IWA+ Sbjct: 147 KK--GVTPIRLILVGIGVNAGFNALLLIFQLKMDPHDFMQAAVWISGSIWGANWNMIWAI 204 Query: 205 LPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXXXXXXXXXXXXXXXTGGI 264 LPW+V+L+ FTL+K+ LN++ L + A G+G +E+ER GGI Sbjct: 205 LPWIVILLLFTLYKARYLNIMQLGDQLATGLGTAVEKERRILLLAAVTLAASCVAAAGGI 264 Query: 265 AFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRNIADPDGIPAGIMVSLIG 324 AF+GL+APH+A+ L GPR+Q IPV DT+ RN+ P IP G+++S++G Sbjct: 265 AFLGLIAPHVARRLTGPRHQTLIPVSAFIGSFLFLLADTLARNVLAPSEIPVGLVISVLG 324 Query: 325 VPYFAYLLLR 334 PYF YLL++ Sbjct: 325 APYFIYLLMK 334 >BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 169/316 (53%), Gaps = 5/316 (1%) Query: 24 TAIAGMGLGYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILITXXXXXXXXXXXXXXQ 83 T I + G + +L L G G+ +++ VLFS RLPR+++ Q Sbjct: 19 TFIVSLNTGAVRIPPSDVLKTLIGMGSERQELVLFSFRLPRMVLALLIGAGLAIAGTILQ 78 Query: 84 SVTRNDLADPGIIGINSGAGVAVAVFFLYFPVSTGSF----IYALPLAAFIGAIMTATLI 139 +TRN LADPGIIGIN+GAG+AV +F + S I+ +PL A +GA A LI Sbjct: 79 GITRNALADPGIIGINAGAGLAVVLFISFVQGSITGLSTFNIFLMPLFALMGAATAAVLI 138 Query: 140 YLFSYSRTRGLDPIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAKWIAGNIWGTDYP 199 YLF+ + + P R++LVG+G + S +++ E W+ G IWG ++ Sbjct: 139 YLFALKKGE-VTPTRLILVGIGIAGLFSAAILIFQLRMEPRDFMSATIWLTGAIWGANWS 197 Query: 200 FIWALLPWLVLLIPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXXXXXXXXXXXXXX 259 ++ +LLPW+VL +P L+K+ LN+L+L + AVG+G +E ER Sbjct: 198 YVLSLLPWIVLFLPLVLYKARYLNVLNLGDPVAVGLGTQVESERRWLLFAAVALAGSCVA 257 Query: 260 XTGGIAFIGLMAPHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRNIADPDGIPAGIM 319 G I+F+GL+APH+A+ +VGP + + +P D V R++ P+ IP GI+ Sbjct: 258 VGGAISFLGLIAPHLARRVVGPNHYVLLPAAALTGSLLLLFADFVARHLLAPNEIPVGIV 317 Query: 320 VSLIGVPYFAYLLLRK 335 V+ G PYF YLL++ Sbjct: 318 VAFFGAPYFIYLLIKT 333 >lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 340 Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 166/303 (54%) Query: 32 GYSSLSFDRLLPVLFGHGTFKEDFVLFSVRLPRILITXXXXXXXXXXXXXXQSVTRNDLA 91 GYS L F ++ FG ++ RLPRI+I Q ++ N LA Sbjct: 36 GYSKLPFIEVIKSFFGMADAGTQLIVSEFRLPRIVIALLVGAGLAVSGTILQGISGNGLA 95 Query: 92 DPGIIGINSGAGVAVAVFFLYFPVSTGSFIYALPLAAFIGAIMTATLIYLFSYSRTRGLD 151 DPGI+GIN+GAG+AV ++ +FP + + +P F+GAI+TA ++Y SYSR+ GL Sbjct: 96 DPGILGINNGAGLAVMLYISFFPSTMDVPVLFMPFIGFVGAILTAFVVYGLSYSRSEGLL 155 Query: 152 PIRMVLVGVGFSLALSGVMIVIISSAERAKVDFIAKWIAGNIWGTDYPFIWALLPWLVLL 211 P R++L G+ + A++ ++ ++ + A+W+AGNIW + + +++ALLPWL++L Sbjct: 156 PNRLLLTGIAVAAAIAALITLLTVRLDPQNYQRYAEWMAGNIWASSWQYVYALLPWLIVL 215 Query: 212 IPFTLFKSSQLNLLSLNEVSAVGVGLNLERERXXXXXXXXXXXXXXXXXTGGIAFIGLMA 271 K L++LS A G+G+ +ERE+ +GGIAFIGL+ Sbjct: 216 GAIAFMKVKTLDVLSFGNQVATGLGVRVEREKFVLLIVAVGLAAACVSVSGGIAFIGLIG 275 Query: 272 PHIAKSLVGPRNQMFIPVXXXXXXXXXXXXDTVGRNIADPDGIPAGIMVSLIGVPYFAYL 331 PHIA+ LVG ++ + DT+GR I P I AGI+V++IG PYF +L Sbjct: 276 PHIARKLVGSAHRWVMVTAALSGGLLLLLADTIGRLIIQPSEIFAGIVVAIIGAPYFLFL 335 Query: 332 LLR 334 L + Sbjct: 336 LAK 338 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,152,105 Number of extensions: 733511 Number of successful extensions: 12075 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 11664 Number of HSP's successfully gapped: 154 Length of query: 335 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 228 Effective length of database: 26,037,693 Effective search space: 5936594004 Effective search space used: 5936594004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)