BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0005.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 398 e-111 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 395 e-110 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 326 3e-89 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 226 4e-59 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 215 8e-56 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/293 (65%), Positives = 238/293 (81%), Gaps = 2/293 (0%) Query: 1 MVEDRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFE 60 MV D+++G R+F N+ LPF+H+VAGSF + E+ +F+LFP +S + Sbjct: 1 MVHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLD 60 Query: 61 AYTFIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTML 120 AY +IFST+ I +S+ +SI VT+VGT FSM +T+LMAYGLSR+DLDGR V FLVVFTML Sbjct: 61 AYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTML 120 Query: 121 FHGGMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCND 180 F GGMIPTFLVV+ LGL+D+Y ALI+P+AI+AFN+IILKNFFQNIPE LEESAKIDGCND Sbjct: 121 FSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCND 180 Query: 181 FGILFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGM 240 GI FRIV PLS+PAIATISLFYAVTYWNT+M AILYL+DS+ WPIQVLLRQIV+++SGM Sbjct: 181 VGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGM 240 Query: 241 --DYSASLDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 D + PP+QTIKMAVIVVAT+P+L++YPF+QKHFAKGA+LGS+KG Sbjct: 241 QGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/284 (68%), Positives = 233/284 (82%), Gaps = 1/284 (0%) Query: 9 GRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYTFIFST 68 RLF + + VLPFIHV+A SF T E+ + KF+L P +S +AY +IFST Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFST 62 Query: 69 NTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTMLFHGGMIPT 128 + I KS+ VS+ VT++GT SM +++LMAYGLSRRDL GR FLVVFTMLF GGMIPT Sbjct: 63 DIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPT 122 Query: 129 FLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCNDFGILFRIV 188 FLVVK LGL+DSY ALILP+AI+AFN+IILKNFFQNIP LEESAKIDGCND GI F+IV Sbjct: 123 FLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIV 182 Query: 189 LPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGMDYSAS-LD 247 LPLSLPAIATISLFYAVTYWNTYM+AILYL+DSAKWPIQVLLRQIV+++SGM S + Sbjct: 183 LPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMG 242 Query: 248 ATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 + +PPP+QTIKMAVIVVAT+P+L++YPF+QKHFAKGA+LGS+KG Sbjct: 243 SGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 326 bits (835), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 156/288 (54%), Positives = 209/288 (72%) Query: 4 DRTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYT 63 T GR+F N +LPF++++AGSF T AELA F +FPK ++ +AY Sbjct: 8 HNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYK 67 Query: 64 FIFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSRRDLDGRNVFNFLVVFTMLFHG 123 ++FST T ++SMGVSI +T+VGT + T MAY L++R + GRN+ LV+F+MLF G Sbjct: 68 YVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSG 127 Query: 124 GMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQNIPEGLEESAKIDGCNDFGI 183 GMIPT+LVVK LGL+D+Y ALILP AI+ FN+II+KNFFQ +P LEESAKIDGC++ G+ Sbjct: 128 GMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGV 187 Query: 184 LFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGMDYS 243 +RI LPLS P IAT +LFYAV WN + A+LY++DSAKWP+Q++LRQ+ +L+ + Sbjct: 188 FWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSDLTATN 247 Query: 244 ASLDATNPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMKG 291 PP+Q IK+AVIV+ATLPIL +YPFLQKHFAKG ++GS+KG Sbjct: 248 GDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 123/276 (44%), Positives = 183/276 (66%), Gaps = 18/276 (6%) Query: 28 VLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYTFIFSTNT-IIKSMGVSIGVTLVGT 86 + PFI+V+ S T+ LA N + + P WSF+AY +++ + + ++ GV+I +T+VGT Sbjct: 51 IFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGVTIFITVVGT 110 Query: 87 LFSMLITALMAYGLSRRDLDGRNVFNFLVVFTMLFHGGMIPTFLVVKE-LGLIDSYAALI 145 L S+ I AL AY +SR+ R +F F+ FTMLF GGM+P ++V+ + LGL +S ALI Sbjct: 111 LMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKNSVWALI 170 Query: 146 LPSAISAFNMIILKNFFQ-NIPEGLEESAKIDGCNDFGILFRIVLPLSLPAIATISLFYA 204 LP A++AF +II++ FFQ ++PE + ESA+IDG +F I F+IVLPLS+P IATI+LF Sbjct: 171 LPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIATIALFST 230 Query: 205 VTYWNTYMSAILYLDDSAKWPIQVLL----------RQIVVLASGMDYSASLDATNPPPD 254 + YWN + +A+L++DD P+Q LL RQ +L+S SA LD+ P Sbjct: 231 LAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSS--QNSALLDSI---PQ 285 Query: 255 QTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMK 290 + +MA++V+ATLPI + YPF QK+F KG +G +K Sbjct: 286 DSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 215 bits (547), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 180/291 (61%), Gaps = 8/291 (2%) Query: 5 RTIGGRLFAAVNFXXXXXXXXXXVLPFIHVVAGSFTTSAELAANKFVLFPKVWSFEAYTF 64 +T G ++F A N+ +LP +H+ A S + S AAN + P ++ +AY Sbjct: 5 KTKGYKVFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYER 64 Query: 65 IFSTNTIIKSMGVSIGVTLVGTLFSMLITALMAYGLSR--RDLDGRNVFNFLVVFTMLFH 122 + + I+S +S+ ++GT+ SM AY LS+ RD GR + + V TMLF+ Sbjct: 65 TIANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFN 124 Query: 123 GGMIPTFLVVKELGLIDSYAALILPSAISAFNMIILKNFFQN-IPEGLEESAKIDGCNDF 181 GG++PT++VV LGL ++ AL+LP AI+AFN+I+L NFF+ +P+ LEESA IDG N F Sbjct: 125 GGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHF 184 Query: 182 GILFRIVLPLSLPAIATISLFYAVTYWNTYMSAILYLDDSAKWPIQVLLRQIVVLASGMD 241 I +I LP+S+PAIAT+SLF V +WN++ ++Y +D+ +P+Q L+ IVV D Sbjct: 185 QIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVV---QQD 241 Query: 242 YSASLDAT--NPPPDQTIKMAVIVVATLPILMIYPFLQKHFAKGAMLGSMK 290 +S DA +T++ A I +A LP+L++YPF+QK+F KG +LG+ K Sbjct: 242 FSQITDAETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,043,961 Number of extensions: 736885 Number of successful extensions: 4483 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 4293 Number of HSP's successfully gapped: 153 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)