BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0004.p (322 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 432 e-121 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 330 1e-90 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 265 8e-71 BS_yteQ [G] COG4209 ABC-type polysaccharide transport system, pe... 263 3e-70 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 259 5e-69 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/318 (66%), Positives = 267/318 (83%), Gaps = 6/318 (1%) Query: 5 SAQPGVVPELKPKSYKSSSELKKRLWRNKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDY 64 SA P + PK + +LK R++RNK LY+M+LPG++YF+IFKY+PM+GLII+FQDY Sbjct: 14 SAAPSI-----PKKVRRQQKLK-RIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDY 67 Query: 65 KPYQGITGSEWVGMEHFQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLNELRG 124 +P+ G+TGSEWVG +HF+RLFTEP F +L NTL+LF N++F+FP+PIILA++LNE+R Sbjct: 68 QPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRL 127 Query: 125 TFFKRTFQTLIYLPHFMSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPGWFRP 184 FKR QT+IY+PHFMSWVIVVS+++V+ T DGG+INE++ + +NFL+S WFRP Sbjct: 128 MVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRP 187 Query: 185 MYIIQIIWREAGWGTIIYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVIVTLL 244 +YI+Q+IWREAGW TIIY A+IAAIDP LYEAA+MDGA R RQIWHITLPAIR VIV LL Sbjct: 188 LYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLL 247 Query: 245 ILKIGSVLDLGFEHVYLLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLV 304 ILKIG +L+LGFEHV+L+LN+MNREVAEI DTYVYTAGL++G FSYSTA+GFFKSI+GL+ Sbjct: 248 ILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLI 307 Query: 305 MVMSVNKLSKKMGEEGVY 322 MVM N L+KK GEEGVY Sbjct: 308 MVMLANWLAKKFGEEGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 165/292 (56%), Positives = 227/292 (77%) Query: 31 RNKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDYKPYQGITGSEWVGMEHFQRLFTEPDF 90 R+K LY++L+PG+LYF+IFKYLPM+G++I+F+DY PY G SEWVG ++F+ F PDF Sbjct: 27 RDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDF 86 Query: 91 LNILGNTLILFGMNILFYFPIPIILALMLNELRGTFFKRTFQTLIYLPHFMSWVIVVSIS 150 +L NTL+L +++LF FP P+ILAL+LNE+R +KR QT IY+PHF+SW IVVSI+ Sbjct: 87 FRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSIT 146 Query: 151 FVMTTMDGGIINELLSYFGFEKINFLLSPGWFRPMYIIQIIWREAGWGTIIYLASIAAID 210 FV T+D G+IN+L+ E+I+FL WFRPM ++Q IW+E GWGTI++LA++A +D Sbjct: 147 FVFFTVDTGVINKLIMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVD 206 Query: 211 PGLYEAARMDGAGRLRQIWHITLPAIRGVIVTLLILKIGSVLDLGFEHVYLLLNSMNREV 270 YEAA MDGAGR R++WHITLPAIR I+ LLIL+IGS L+LGFE VYL+ NS+NR V Sbjct: 207 QEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSV 266 Query: 271 AEIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKLSKKMGEEGVY 322 A+I DTYVY G+ QG +SYSTA+G FKS++G++++ N ++KK +EG++ Sbjct: 267 ADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGLF 318 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 265 bits (677), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 132/295 (44%), Positives = 202/295 (68%), Gaps = 3/295 (1%) Query: 24 ELKKRLW---RNKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDYKPYQGITGSEWVGMEH 80 +LKK+ W R L+V+L+P ++ +IF+Y PM+G++++FQDYKP+ G TGSEWVG++H Sbjct: 16 KLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQH 75 Query: 81 FQRLFTEPDFLNILGNTLILFGMNILFYFPIPIILALMLNELRGTFFKRTFQTLIYLPHF 140 F +F ++ NTL++ + ++F +PII+AL+LNE+ KRT QT+IYLP+F Sbjct: 76 FITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYF 135 Query: 141 MSWVIVVSISFVMTTMDGGIINELLSYFGFEKINFLLSPGWFRPMYIIQIIWREAGWGTI 200 +SWVI+ I + + DGGI+N+ L FG + I FL S WFR +I +W+E G+ TI Sbjct: 136 LSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFNTI 195 Query: 201 IYLASIAAIDPGLYEAARMDGAGRLRQIWHITLPAIRGVIVTLLILKIGSVLDLGFEHVY 260 ++LA+I A++P LYEAA +DGA R +Q HITLPA+ +I+ + L +G++L+ GF+ ++ Sbjct: 196 VFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIF 255 Query: 261 LLLNSMNREVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKLSKK 315 L N + + +IIDTYVY L G FSY TA+G FKS+I LV+++ +L+ K Sbjct: 256 NLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYK 310 >BS_yteQ [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 163 Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 121/163 (74%), Positives = 144/163 (88%) Query: 160 IINELLSYFGFEKINFLLSPGWFRPMYIIQIIWREAGWGTIIYLASIAAIDPGLYEAARM 219 +INEL+ +FG EKINFLL+ WFRP+YI+Q+IWREAGW TIIYLA+I A+DP LYEAA+M Sbjct: 1 MINELIVFFGGEKINFLLNEEWFRPLYILQVIWREAGWSTIIYLAAITAVDPQLYEAAKM 60 Query: 220 DGAGRLRQIWHITLPAIRGVIVTLLILKIGSVLDLGFEHVYLLLNSMNREVAEIIDTYVY 279 DGAGRLRQ+WHITLPAI+ VIV LLILKIG L+LGFEHVYLLLN+ NREVAEI DTYVY Sbjct: 61 DGAGRLRQMWHITLPAIKSVIVVLLILKIGDTLELGFEHVYLLLNATNREVAEIFDTYVY 120 Query: 280 TAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKLSKKMGEEGVY 322 TAGL+QG FSYSTA+G FK+ +GL++VM N+L+KK GEEG+Y Sbjct: 121 TAGLKQGQFSYSTAVGVFKAAVGLILVMLANRLAKKFGEEGIY 163 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/293 (43%), Positives = 192/293 (65%), Gaps = 2/293 (0%) Query: 31 RNKLLYVMLLPGVLYFVIFKYLPMYGLIISFQDYKPYQGITGSEWVGMEHFQRLFTEPDF 90 + K LY+M LP V + ++F Y P++G ++FQ+++P EWVG++HF LF + F Sbjct: 26 QQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRF 85 Query: 91 LNILGNTLILFGMNILFYFPIPIILALMLNELRGTFFKRTFQTLIYLPHFMSWVIVVSIS 150 +L NTL + M ++ F +PI+ A++LNE+R FKRT QT+ YLPHF+SWV+V I Sbjct: 86 YLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIV 145 Query: 151 FVMTTMDGGIINELLSYFGF--EKINFLLSPGWFRPMYIIQIIWREAGWGTIIYLASIAA 208 M ++DGGI+N+LL FGF + + F+ WF + + +W+E GW +II+LA++A Sbjct: 146 TKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAG 205 Query: 209 IDPGLYEAARMDGAGRLRQIWHITLPAIRGVIVTLLILKIGSVLDLGFEHVYLLLNSMNR 268 IDP LYEAA++DGA R RQIWHITLP IR I+ +LIL IG ++ +GFE +LL N + Sbjct: 206 IDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVV 265 Query: 269 EVAEIIDTYVYTAGLRQGHFSYSTAIGFFKSIIGLVMVMSVNKLSKKMGEEGV 321 + +E++D Y GL G +SY TAIG F S++ ++++ N + K+ + V Sbjct: 266 DYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.145 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,094,988 Number of extensions: 992816 Number of successful extensions: 4664 Number of sequences better than 1.0e-05: 151 Number of HSP's gapped: 4542 Number of HSP's successfully gapped: 151 Length of query: 322 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 216 Effective length of database: 26,153,027 Effective search space: 5649053832 Effective search space used: 5649053832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)