BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0008.p (194 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value aq_1058 [K] COG1309 Transcriptional regulator 55 5e-08 MA0364 [K] COG1309 Transcriptional regulator 49 3e-06 NMA0364 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) 49 3e-06 BS_yerO [K] COG1309 Transcriptional regulator 49 5e-06 VNG2675C [K] COG1309 Transcriptional regulator 49 7e-06 >aq_1058 [K] COG1309 Transcriptional regulator Length = 179 Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 54/85 (63%), Gaps = 3/85 (3%) Query: 8 NQKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETYE 67 ++R++EV+ LF EKG+ TS++E+V+ + +SK Y+HF KEEL+ +++ T++ Sbjct: 3 TKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIE---RTHK 59 Query: 68 RAMDQILSQNQLSVEDRVQMFLKHL 92 + + + + E+ ++MFL+ L Sbjct: 60 KIISLFEENKEKTPEELLEMFLEVL 84 >MA0364 [K] COG1309 Transcriptional regulator Length = 192 Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 9 QKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETYER 68 + +I+ A LF+E GF T + ++ + V++ VY++F K E+L V+D E ++ Sbjct: 12 HQEIIDTAKALFMENGFDKTQISDIAKRMNVAQGLVYHYFKSKTEMLYAVIDELAEEKQK 71 Query: 69 AMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATHIKEKIGLF 128 M+ ++++ + + +++ M LS + S + P I+ I E + Sbjct: 72 EMETVMNRTESTALEKLTML---LSFKMNSDNFGKLMPSIS-------SDVAIIEYCSIK 121 Query: 129 FTGLQMKISL-LLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDATVITK 184 + M I L L++QG G + E +ALFI L G +++ D V T+ Sbjct: 122 KAAVAMPILLSLIKQGNSDGSW--NCDYPEESALFI--LRGLSGFSDSTDDLAVKTE 174 >NMA0364 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Length = 192 Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 9 QKRVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETYER 68 + +I+ A LF+E GF T + ++ + V++ VY++F K E+L V+D E ++ Sbjct: 12 HQEIIDTAKALFMENGFDKTQISDIAKRMNVAQGLVYHYFKSKTEMLYAVIDELAEEKQK 71 Query: 69 AMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYIQTPAQATHIKEKIGLF 128 M+ ++++ + + +++ M LS + S + P I+ I E + Sbjct: 72 EMETVMNRTESTALEKLTML---LSFKMNSDNFGKLMPSIS-------SDVAIIEYCSIK 121 Query: 129 FTGLQMKISL-LLQQGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDATVITK 184 + M I L L++QG G + E +ALFI L G +++ D V T+ Sbjct: 122 KAAVAMPILLSLIKQGNSDGSW--NCDYPEESALFI--LRGLSGFSDSTDDLAVKTE 174 >BS_yerO [K] COG1309 Transcriptional regulator Length = 289 Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Query: 7 MNQK--RVIEVAATLFLEKGFAYTSMDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIE 64 MN+K R+I+ + LF +KGFA T++ E+ +SK Y HF KE LL +Y+I Sbjct: 1 MNEKKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHFKSKEALLLSACEYYIG 60 Query: 65 TYERAMDQILSQNQLSVEDRVQMFLKHLSQGVQSREYKGSCPFITLYI 112 M I + L+ + ++ K + G Q +++ FI L + Sbjct: 61 MSMNKMKNI--EEDLAGKPPKEVLKKQI--GAQFEDFRDHKDFIVLLL 104 >VNG2675C [K] COG1309 Transcriptional regulator Length = 172 Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 12/169 (7%) Query: 30 MDELVRVSKVSKSNVYYHFADKEELLAGVVDYWIETYERAMDQILSQNQLSVEDRVQMFL 89 M+ + + K++VY+H+A+K+ LL +VDY +E +I+ + +++ F+ Sbjct: 1 MNRIAEEVGLQKASVYHHYAEKDTLLLALVDYVVEELRY---RIVQPDDEDPRQQLRRFI 57 Query: 90 KHLSQGVQSREYKG--SCP---FITLYIQTPAQATH---IKEKIGLFFTGLQMKISLLLQ 141 + G + S P I +IQ AQA H +E+I Q I+ ++Q Sbjct: 58 DEVVFGHHAGPDATALSPPTDGTIRAFIQIRAQAVHDDDYREQITTIDRIQQEHIAEIIQ 117 Query: 142 QGAEKGEFRDTIHIDEVAALFITNLEGALFLAETLKDATVITKTASHFF 190 +G + GEFRD + +VA+ T L G T+ + A+H + Sbjct: 118 RGVDAGEFRD-VDPTQVASFISTLLTGVFTRRVTMTTDLTPVREATHAY 165 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,387,104 Number of extensions: 467362 Number of successful extensions: 1193 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 1202 Number of HSP's successfully gapped: 6 Length of query: 194 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 93 Effective length of database: 26,729,697 Effective search space: 2485861821 Effective search space used: 2485861821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 113 (48.1 bits)