BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0009.p
         (1010 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0960 [S] COG5412 Phage-related protein                               67   1e-10
BH0012 [S] COG5412 Phage-related protein                               56   3e-07

>BH0960 [S] COG5412 Phage-related protein
          Length = 584

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 37/267 (13%)

Query: 599 FTRLRDVILEIMPQIGGAVDKLLNEILIPFVDYAVNDFIMPIAQKITEVLAPVFTDILVT 658
           FT    VI++   +    V  L++++ I F+   +   +  I + +TE      T IL+ 
Sbjct: 164 FTEAGSVIIDKFGEAFMFVADLISDV-ITFISEVIMTGLTVIQEFLTE-HGDTITAILIG 221

Query: 659 AFQEASSAFEWAVDMIVDIYNTLIKPTFDLIKQIVLDVLDIIKKAWDEHGQKILDGVKEF 718
           A++      E+ +  I DI                  VLD I + W+EHGQ I+D    F
Sbjct: 222 AYEFIKEGIEFVISFIADIIEM---------------VLDAISQFWEEHGQTIMD----F 262

Query: 719 LNNVKNTLKKLWDEVLKPIIE---PFLKTMKELWEG---TISKIIDKVVNLVAKLIESAL 772
                 T+K +  EV+  ++E     L  + ELW+    TI  I+      +  +I + +
Sbjct: 263 AEAAWETIKTVVSEVINTVMEVVNQVLDRISELWDEHGETIMAIVKGAFEFIKTIIGTVI 322

Query: 773 EIYNDFISPLIN---FVIDLLAPAFVKGFNIALNIVKTVIEGIGEFISGLLDALDGLIDF 829
           ++  + IS  +     + D + PA      +A  ++K  ++   +++SG++D +  LI  
Sbjct: 323 DVIRERISTWLEAAKIIFDTVWPAISSIVKVAWELIKLSVKNAIDYVSGIIDTVMNLI-- 380

Query: 830 VTGVFTGNWSKAWEGVKKIFKGVFDSL 856
                 G+W  AWE +KK  + +++++
Sbjct: 381 -----KGDWEGAWESIKKTAERIWNNM 402



 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 46/263 (17%)

Query: 632 AVNDFIMPIAQKITEVLAPVFTDILVTAFQEASS--------AFEWAVDMIVDIYNTLIK 683
           A+ D +  I  +I E+++PV  +++   F EA S        AF +  D+I D+      
Sbjct: 137 AIWDILTEIFGQIMEIISPVI-ELIKEDFTEAGSVIIDKFGEAFMFVADLISDVIT---- 191

Query: 684 PTFDLIKQIVLDVLDIIKKAWDEHGQKI---LDGVKEFLNN---------------VKNT 725
                I ++++  L +I++   EHG  I   L G  EF+                 V + 
Sbjct: 192 ----FISEVIMTGLTVIQEFLTEHGDTITAILIGAYEFIKEGIEFVISFIADIIEMVLDA 247

Query: 726 LKKLWDEVLKPIIEPFLKTMKELWEGTISKIIDKVVNLVAKLIESALEIYNDFISPLINF 785
           + + W+E  + I++ F +   E  +  +S++I+ V+ +V ++++   E++++    ++  
Sbjct: 248 ISQFWEEHGQTIMD-FAEAAWETIKTVVSEVINTVMEVVNQVLDRISELWDEHGETIM-- 304

Query: 786 VIDLLAPAFVKG-FNIALNIVKTVIEGIGEFISGLLDALDGLIDFVTGVFTGNWSKAWEG 844
                  A VKG F     I+ TVI+ I E IS  L+A   + D V    +     AWE 
Sbjct: 305 -------AIVKGAFEFIKTIIGTVIDVIRERISTWLEAAKIIFDTVWPAISSIVKVAWEL 357

Query: 845 VKKIFKGVFDSLWGIVKIPLNLI 867
           +K   K   D + GI+   +NLI
Sbjct: 358 IKLSVKNAIDYVSGIIDTVMNLI 380


>BH0012 [S] COG5412 Phage-related protein
          Length = 509

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 60/194 (30%)

Query: 672 DMIVDIYNTLIKPTFDLIKQIVL---DVLDIIKKAWDEHGQKILDGVKEFLNNVKNTLKK 728
           D ++ ++ T+ +    ++ ++V    + L++IK+ W+EHG    D +K+ ++NV N    
Sbjct: 130 DTVLTVWETIQRVITTVLNEVVSFISEKLEMIKQFWNEHG----DAIKQAVSNVFNA--- 182

Query: 729 LWDEVLKPIIEPFLKTMKELWEGTISKIIDKVVNLVAKLIESALEIYNDFISPLINFVID 788
           +W  V++PI++  L  M+ +W                                   FV +
Sbjct: 183 IW-AVIQPIMDMILAIMQFVWP----------------------------------FVRE 207

Query: 789 LLAPAFVKGFNIALNIVKTVIEGIGEFISGLLDALDGLIDFVTGVFTGNWSKAWEGVKKI 848
           L+   +        N +K VI+G   FI GL+          TG+FTG++S  WEG+K++
Sbjct: 208 LIIGVW--------NNIKGVIDGALSFIMGLIKTF-------TGLFTGDFSLMWEGLKQM 252

Query: 849 FKGVFDSLWGIVKI 862
           F G    +W ++++
Sbjct: 253 FMGALQFIWNLIQL 266


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 61,428,397
Number of extensions: 2316344
Number of successful extensions: 13776
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13753
Number of HSP's successfully gapped: 6
Length of query: 1010
Length of database: 38,378,431
Length adjustment: 116
Effective length of query: 894
Effective length of database: 24,999,687
Effective search space: 22349720178
Effective search space used: 22349720178
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)