BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0024.p (288 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2986 [U] COG0706 Preprotein translocase subunit YidC 203 3e-52 BH1169 [U] COG0706 Preprotein translocase subunit YidC 191 2e-48 BS_spoIIIJ [U] COG0706 Preprotein translocase subunit YidC 175 6e-44 BH4064 [U] COG0706 Preprotein translocase subunit YidC 170 3e-42 BS_yqjG [U] COG0706 Preprotein translocase subunit YidC 166 6e-41 >lin2986 [U] COG0706 Preprotein translocase subunit YidC Length = 673 Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 13/272 (4%), Positives = 52/272 (19%), Gaps = 13/272 (4%) Query: 4 MIAVLSGCAPASTVTHTTEDLKNGGFWQSNVVYYFAIALDTFAEWFNGQYGFAVLVMVII 63 ++A + + A T + + Sbjct: 20 VLAGAGSGKTRVI--TNKIA--HLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 Query: 64 VRTLILPLTMKQVKSSRAMQAIQPELEKIKKKYK----DTPEKVQQETMRLFQENKVNPM 119 R L++ + ++ + K E + + + + Sbjct: 76 ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQL 135 Query: 120 AGCLPLIVQMPIFIALYNSIYYNPSLREHSFLWLQLGKPDHLFILPLLAAATTFLQTRMM 179 + + + R + + + + Sbjct: 136 ISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLL-L 194 Query: 180 TKMNPVQQQGPMQFMMMVYPVLIFIMSYNFPSALPLYWFYSNLYTIIQNYFL---YRN-N 235 V+++ + ++ + + L + + + +R Sbjct: 195 QANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGAR 254 Query: 236 DKTKLXXXXXXXXXXXXKEVNLVKSKNTNARK 267 + + K +S + Sbjct: 255 PQNLVLLSQDFPALKVIKLEQNYRSSGRILKA 286 >BH1169 [U] COG0706 Preprotein translocase subunit YidC Length = 673 Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 18/246 (7%), Positives = 46/246 (18%), Gaps = 29/246 (11%) Query: 8 LSGCAPASTVTHTTEDLKNGGFWQSNVVYYFAIALDTFAEWFNGQYGFAVLVMVIIVRTL 67 + A + T + + N + + Sbjct: 20 VLAGAGSGKTRVITN-----KIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK 74 Query: 68 ILPLTMKQVKSSRAMQAIQPELEKIKKKYKDTPEK-------VQQETMRLFQENKVNPMA 120 M + + I+ E + K + +++ T L +++KV Sbjct: 75 EARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQ 134 Query: 121 GCLPLIVQMPIFIALYNSIYYNPSLREHSFLWLQLGKPDHLFILPLLAAATTFLQTRM-- 178 + + R+ F + L Sbjct: 135 LISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDA--HLKACNVLDFDDLILLPTL 192 Query: 179 -----MTKMNPVQQQGP--------MQFMMMVYPVLIFIMSYNFPSALPLYWFYSNLYTI 225 Q + V + + S + + + Sbjct: 193 LLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRG 252 Query: 226 IQNYFL 231 + L Sbjct: 253 ARPQNL 258 >BS_spoIIIJ [U] COG0706 Preprotein translocase subunit YidC Length = 673 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 17/243 (6%), Positives = 44/243 (18%), Gaps = 10/243 (4%) Query: 1 MVLMIAVLSGCAPASTVTHTTEDLKNGGFWQSNVVYYFAIALDTFAEWFNGQYGFAVLVM 60 V ++ A + K Y A + V Sbjct: 13 FVTGPCLVLAGA--GSGKTRVITNKI--AHLIRGCGYQARHIAAVTFTNKAAREMKERVG 68 Query: 61 VIIVRTLILPLTMKQVKSSRAMQAIQPELEKIKKKY--KD--TPEKVQQETMRLFQENKV 116 + R L + + + K T + + + Sbjct: 69 QTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDD 128 Query: 117 NPMAGCLPLIVQMPIFIALYNSIYYNPSLREHSFLWLQLGKPDHLFILPLLAAATTFLQT 176 + L + S ++ E ++ + L Sbjct: 129 KVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLIL 188 Query: 177 RMMTKMNPVQQQGPMQFMMMVYPVLIFIMSYNFPSALPLYWFYSNLYTIIQNYFLYRNND 236 + ++ ++ + +L+ S L + Sbjct: 189 LPTLLLQ-ANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTV-VGDDDQS 246 Query: 237 KTK 239 Sbjct: 247 IYS 249 >BH4064 [U] COG0706 Preprotein translocase subunit YidC Length = 673 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 14/243 (5%), Positives = 37/243 (15%), Gaps = 13/243 (5%) Query: 1 MVLMIAVLSGCAPASTVTHTTEDLKNGGFWQSNVVYYFAIALDTFAEWFNGQYGFAVLVM 60 + + A A + + A A F + + Sbjct: 11 VEFVTGPCLVLAGAGSGKTRVIT----NKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 61 VIIVRTLILPLTMKQVKSSRAMQAIQPELEKIKKKY--KD--TPEKVQQETMRLFQENKV 116 V + I L + Sbjct: 67 VGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE 126 Query: 117 NPMAGCLPLIVQMPIFIALYNSIYYNPSLREHSFLWLQLGKPDHLFILPLLAAATTFLQT 176 + LI + + + + + L A Sbjct: 127 DDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLY-DAHLKACNVLDFDD 185 Query: 177 RMMTKMNPVQQQGPMQFMMMVYPVLIFIMSYNFPSALPLYWFYSNLYTIIQNYFLYRNND 236 ++ +Q + Y + ++ + + Sbjct: 186 LILLPTLLLQ----ANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVG 241 Query: 237 KTK 239 Sbjct: 242 DDD 244 >BS_yqjG [U] COG0706 Preprotein translocase subunit YidC Length = 673 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 17/257 (6%), Positives = 43/257 (16%), Gaps = 23/257 (8%) Query: 2 VLMIAVLSGCAPASTVTHTTEDLKNGGFWQSNVVYYFAIALDTFAEWFNGQYGFAVLVMV 61 + L A + K + IA TF + V + Sbjct: 13 FVTGPCLVLAG-AGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 Query: 62 IIVRTLILPLTMKQVKSSR----AMQAIQPELEKIKKKYKDT--PEK---VQQETMRLFQ 112 L ++ A+ + D K Sbjct: 72 GRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVL 131 Query: 113 ENKVNPMA-GCLPLIVQMPIFIALYNSIYYNPSLREHSFLWLQLGKPDHLFILPLLAAAT 171 ++ + A + L + + Sbjct: 132 LQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACN--VLDFDDLILL 189 Query: 172 TFLQTRMMTKM---------NPVQQQGPMQFMMMVYPVLIFIMSYNFPSALPLYWFYSNL 222 L + ++ + + Y ++ ++ + S Sbjct: 190 PTLLLQANEEVRKRWQNKIRYLLVDEYQ-DTNTSQYELVKLLVGSRARFTVVGDDDQSIY 248 Query: 223 YTIIQNYFLYRNNDKTK 239 + Sbjct: 249 SWRGARPQNLVLLSQDF 265 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,093,991 Number of extensions: 622767 Number of successful extensions: 1704 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 1669 Number of HSP's successfully gapped: 20 Length of query: 288 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 183 Effective length of database: 26,268,361 Effective search space: 4807110063 Effective search space used: 4807110063 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)