BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0018.p (256 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2923 [D] COG1192 ATPases involved in chromosome partitioning 391 e-109 CC3753 [D] COG1192 ATPases involved in chromosome partitioning 289 3e-78 CAC3730 [D] COG1192 ATPases involved in chromosome partitioning 286 2e-77 BMEI0009 [D] COG1192 ATPases involved in chromosome partitioning 283 1e-76 XF2282 [D] COG1192 ATPases involved in chromosome partitioning 280 2e-75 >lin2923 [D] COG1192 ATPases involved in chromosome partitioning Length = 253 Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust. Identities = 180/252 (71%), Positives = 229/252 (90%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +SK+IA+ANQKGGVGKTT+SVNL + +A LGK+VLLVDIDPQGN +SGVG+NK ++ +CI Sbjct: 1 MSKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGNASSGVGVNKGEIEHCI 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 YD+L+++ Q+ + +T ++ L++IPATIQLAGAE+ELV ISRE++LKKA+++++ +YD Sbjct: 61 YDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAISREIRLKKAIDSIRDDYD 120 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 Y+IIDCPPSLG+LT+N+LTAADSV+IP+QCEYYALEGLSQLLNT+R+VQK+LN L+IEG Sbjct: 121 YVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQLLNTIRIVQKHLNEDLQIEG 180 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 VLLTMLDARTNLGIQVIEEVKKYFQ KV+ TIIPRNVRLSEAPSHG+ I+ YD +SKGAE Sbjct: 181 VLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPRNVRLSEAPSHGKPILLYDAKSKGAE 240 Query: 244 VYLELAKEVISY 255 VYLELAKEV+++ Sbjct: 241 VYLELAKEVVAH 252 >CC3753 [D] COG1192 ATPases involved in chromosome partitioning Length = 267 Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 130/253 (51%), Positives = 192/253 (75%), Gaps = 2/253 (0%) Query: 6 KIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCIYD 65 +++AIANQKGGVGKTTT++NLG +A G+RVLL+D DPQGN ++G+GI + +YD Sbjct: 7 RVLAIANQKGGVGKTTTAINLGTALAACGERVLLIDADPQGNCSTGLGIGRTQRRTTLYD 66 Query: 66 ILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSN--YD 123 +L+ EA + ++T++ GL +IPA L+G EIEL T R +L+ AL A+++N Y Sbjct: 67 VLMGEAPVVDAAVKTELPGLDVIPADADLSGVEIELGQTARRSYRLRDALEAIRANGPYT 126 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 Y++IDCPPSL +LT+N++TAAD+V +P+QCE++ALEGL+QL+ T+ V+ +LNP L+I+G Sbjct: 127 YVLIDCPPSLNVLTVNAMTAADAVFVPLQCEFFALEGLTQLMRTIERVRGSLNPRLEIQG 186 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 V+LTM D R +L QV ++V+ +F +KVY +IPRNVR+SEAPS G+ ++ YD + G++ Sbjct: 187 VVLTMYDRRNSLSEQVAKDVRAHFGDKVYDAVIPRNVRVSEAPSFGKPVLLYDLKCAGSQ 246 Query: 244 VYLELAKEVISYE 256 YL+LA+EVIS E Sbjct: 247 AYLKLAREVISRE 259 >CAC3730 [D] COG1192 ATPases involved in chromosome partitioning Length = 253 Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 139/250 (55%), Positives = 191/250 (76%), Gaps = 1/250 (0%) Query: 6 KIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCIYD 65 K+I++ NQKGGVGKTTT++NL +A G +VL +DIDPQGNTTSG+GI+K+ + YD Sbjct: 2 KVISVFNQKGGVGKTTTNINLCTYLAMKGLKVLTIDIDPQGNTTSGLGIDKSTLELSTYD 61 Query: 66 ILINEANPQETILETQ-IEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYDY 124 L + ++ I E+Q I+ L+I P+T++LAGAE+EL++ +RE LK + A+ +DY Sbjct: 62 ALTTDVALEDIIQESQLIKNLYIAPSTVELAGAEVELINIDNRERILKNKIKAMNKKFDY 121 Query: 125 IIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEGV 184 I IDCPPSLG +TINSLTA++SV+IPIQ E+YALEG+ QL+NTV+LV+K+LN L++EGV Sbjct: 122 IFIDCPPSLGFITINSLTASNSVLIPIQTEFYALEGVGQLVNTVQLVKKSLNKQLEVEGV 181 Query: 185 LLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAEV 244 +LTM D RT L +V +EVKKYF K+Y T IPRN+RL+EAPS+G I+ YD++ +GAE Sbjct: 182 ILTMCDNRTKLSNEVAQEVKKYFSGKLYNTTIPRNIRLAEAPSYGLPIVLYDDKCRGAEC 241 Query: 245 YLELAKEVIS 254 Y LA E +S Sbjct: 242 YRNLANEFLS 251 >BMEI0009 [D] COG1192 ATPases involved in chromosome partitioning Length = 278 Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 126/256 (49%), Positives = 187/256 (73%), Gaps = 3/256 (1%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +S+II IANQKGGVGKTTT++NL +A +G+ VL+VD+DPQGN ++G+GI++ + Sbjct: 17 MSRIITIANQKGGVGKTTTAINLATALAAIGETVLIVDLDPQGNASTGLGIDRHNRPLSS 76 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKAL---NAVKS 120 YD+L ++ E ++T + L I+P+T+ L G E+E+ + R +L+ AL + V Sbjct: 77 YDVLTQASSVPEAAMQTDVPNLFIVPSTLDLLGIEMEIAQSADRTRRLRDALRFDSGVSE 136 Query: 121 NYDYIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLK 180 + Y+++DCPPSL +LT+N++ AADSV++P+QCE++ALEGL QLL TV V+ +NP L Sbjct: 137 RFTYVLVDCPPSLNLLTLNAMAAADSVLVPLQCEFFALEGLGQLLQTVDQVRSTINPELS 196 Query: 181 IEGVLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSK 240 I+G++LTM D+R NL QV+++V+ + EKVYRT+IPRNVR+SEAPSHG+ I YD + Sbjct: 197 IQGIVLTMFDSRNNLATQVVDDVRAFMGEKVYRTVIPRNVRVSEAPSHGKPAILYDLKCA 256 Query: 241 GAEVYLELAKEVISYE 256 G++ YL+LA EVI E Sbjct: 257 GSQAYLQLASEVIQRE 272 >XF2282 [D] COG1192 ATPases involved in chromosome partitioning Length = 264 Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/250 (54%), Positives = 184/250 (73%), Gaps = 1/250 (0%) Query: 4 VSKIIAIANQKGGVGKTTTSVNLGAGMATLGKRVLLVDIDPQGNTTSGVGINKADVANCI 63 +++IIAIANQKGGVGKTTT+VNL AG+ +RVLLVD+D QGN T G G++K + + Sbjct: 1 MARIIAIANQKGGVGKTTTAVNLAAGLVRASERVLLVDLDSQGNATMGSGVDKNGLISST 60 Query: 64 YDILINEANPQETILETQIEGLHIIPATIQLAGAEIELVSTISRELKLKKALNAVKSNYD 123 ++L+ E + E+ EG ++P I L A I+L+ RE +LK+AL+ ++ YD Sbjct: 61 CEVLLGERSVAESRARAP-EGFDLLPGNIDLTAAAIQLMEQSEREQRLKRALSPIRHEYD 119 Query: 124 YIIIDCPPSLGILTINSLTAADSVIIPIQCEYYALEGLSQLLNTVRLVQKNLNPHLKIEG 183 +I+IDCPP+L +LT+N+LTAADSVI+P+QCEYYALEGLS LL T+ ++ NLNP L+IEG Sbjct: 120 FILIDCPPALSLLTVNALTAADSVIVPMQCEYYALEGLSALLETIEALRVNLNPRLEIEG 179 Query: 184 VLLTMLDARTNLGIQVIEEVKKYFQEKVYRTIIPRNVRLSEAPSHGQSIITYDNRSKGAE 243 VL TM D R NL V E+ ++F +KV+RTI+PRNVRL+EAPS+G+SI+ YD S+G+ Sbjct: 180 VLRTMFDIRNNLANAVSTELTEHFGDKVFRTIVPRNVRLAEAPSYGKSIVGYDGASRGSV 239 Query: 244 VYLELAKEVI 253 YL LA EVI Sbjct: 240 AYLGLANEVI 249 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.135 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,475,851 Number of extensions: 660044 Number of successful extensions: 8658 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 8525 Number of HSP's successfully gapped: 138 Length of query: 256 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 152 Effective length of database: 26,383,695 Effective search space: 4010321640 Effective search space used: 4010321640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)