BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0017.p (265 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH4057 [K] COG1475 Predicted transcriptional regulators 242 3e-64 BS_spo0J [K] COG1475 Predicted transcriptional regulators 238 5e-63 lin2922 [K] COG1475 Predicted transcriptional regulators 216 4e-56 SA0348 [K] COG1475 Predicted transcriptional regulators 213 4e-55 CAC3729 [K] COG1475 Predicted transcriptional regulators 192 5e-49 >BH4057 [K] COG1475 Predicted transcriptional regulators Length = 288 Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 118/258 (45%), Positives = 180/258 (69%), Gaps = 1/258 (0%) Query: 7 DKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVR-SVLKGYEIIAGER 65 ++V E+ L +LR NPYQPRK F E+A+QELA+SI++HG++QPI+VR S +KGYEI+ GER Sbjct: 22 EQVEEVKLLELRPNPYQPRKTFLEEALQELADSIKEHGILQPIVVRKSSVKGYEIVVGER 81 Query: 66 RFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQFALTQE 125 RFRA++ G +P V+R L DQ++ME+ALIENLQRE+LN +E A AY+ LM +TQE Sbjct: 82 RFRAAERAGLVKVPVVIRELDDQKMMEMALIENLQREDLNPIEEANAYEKLMTHLQMTQE 141 Query: 126 ELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQLAEQCV 185 +L++++GKSR HIAN LRLL LP+ V+E++S G +SMGH RA++ L + + + + + Sbjct: 142 QLAVRLGKSRPHIANHLRLLQLPKVVQEFISEGKLSMGHGRALLGLANKNEISSVLNKIL 201 Query: 186 EQQWSVRELEEVVKNLDRKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXXXXXXXX 245 E++ SVR++E +V+ ++ + + K K P++ ++ LR F T+V Sbjct: 202 EEKLSVRQVEALVQQMNERVSRGTKKAKPKLSPFLKERQDFLRSHFGTSVAIKKGKKKGK 261 Query: 246 XXLNYYSAQDLERLLELL 263 + ++S DLER+LE+L Sbjct: 262 IEIEFFSDDDLERILEML 279 >BS_spo0J [K] COG1475 Predicted transcriptional regulators Length = 282 Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 116/258 (44%), Positives = 177/258 (68%) Query: 6 DDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEIIAGER 65 ++ V EI + LR NPYQPRK F+++A+ EL ES+ QHG++QP+IVR LKGY+I+AGER Sbjct: 20 EETVEEIKIADLRPNPYQPRKHFDDEALAELKESVLQHGILQPLIVRKSLKGYDIVAGER 79 Query: 66 RFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQFALTQE 125 RFRA++ G T+PA+VR LS+ + EIAL+ENLQRE+L+ +E A AY L+ LTQE Sbjct: 80 RFRAAKLAGLDTVPAIVRELSEALMREIALLENLQREDLSPLEEAQAYDSLLKHLDLTQE 139 Query: 126 ELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQLAEQCV 185 +L+ ++GKSR HIAN LRLL+LPE +++ ++ GT+SMGH R ++ LK+ ++ L ++ + Sbjct: 140 QLAKRLGKSRPHIANHLRLLTLPENIQQLIAEGTLSMGHGRTLLGLKNKNKLEPLVQKVI 199 Query: 186 EQQWSVRELEEVVKNLDRKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXXXXXXXX 245 +Q +VR+LE++++ L++ K K +D + E L+ F TTV Sbjct: 200 AEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDAVLKERESYLQNYFGTTVNIKRQKKKGK 259 Query: 246 XXLNYYSAQDLERLLELL 263 + ++S +DL+R+LELL Sbjct: 260 IEIEFFSNEDLDRILELL 277 >lin2922 [K] COG1475 Predicted transcriptional regulators Length = 283 Score = 216 bits (549), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 117/266 (43%), Positives = 173/266 (65%), Gaps = 17/266 (6%) Query: 6 DDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEIIAGER 65 ++ V I + +++ NPYQPRK F+ AI EL +SI+ HGV+QPII+R+ KGYEI+ GER Sbjct: 20 EETVQNIAIKEIKPNPYQPRKIFDTKAINELRDSIKIHGVLQPIILRNAEKGYEIVVGER 79 Query: 66 RFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQFALTQE 125 RFRA++ IPAVVR L+++++ME+++IENLQRE+L+ +E A +YQ LM + LTQ Sbjct: 80 RFRAAKEAKLKEIPAVVRDLTEEEMMELSVIENLQREDLSPLEEAESYQFLMKKLGLTQA 139 Query: 126 ELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQLAEQCV 185 +L+ +VGKSR +IANF+RLL+LPEEV+ + G++S GH R ++ LK + + A++ Sbjct: 140 KLAERVGKSRPYIANFVRLLTLPEEVQVMLRDGSLSAGHGRVLLGLKLKKNIIPTAKKAA 199 Query: 186 EQQWSVRELEEVVKNLDR-------KPAGAIKAKVVKRDP-YIDNVEEQLRERFKTTVXX 237 Q +VR+LE+VV NL+ KPA R P +I E QLR++F T V Sbjct: 200 TQGLTVRQLEDVVNNLNENVSRETIKPA---------RVPIFIRESESQLRDKFGTAVSI 250 Query: 238 XXXXXXXXXXLNYYSAQDLERLLELL 263 + + S DL+R+LE+L Sbjct: 251 KRRDKKGKIEIEFLSDDDLDRILEIL 276 >SA0348 [K] COG1475 Predicted transcriptional regulators Length = 278 Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 103/265 (38%), Positives = 174/265 (65%), Gaps = 1/265 (0%) Query: 1 LSINEDDKVVEIPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEI 60 ++ +D+++ +I + ++ NPYQPRK F+E+ + +LA+SI+Q+G++QPI++R ++GY I Sbjct: 9 ITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYI 68 Query: 61 IAGERRFRASQYCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQF 120 + GERRFRAS+ G + A+++ L+D+ +ME+A+IENLQRE+LNA+E A +YQ LM Sbjct: 69 VVGERRFRASKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDL 128 Query: 121 ALTQEELSLKVGKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQL 180 +TQ+E++ ++ KSR +IAN LRLL LP+++ + V G ++ H R ++A+KD + + +L Sbjct: 129 KITQQEVAKRLSKSRPYIANMLRLLHLPKKIADMVKDGRLTSAHGRTLLAIKDEQQMLRL 188 Query: 181 AEQCVEQQWSVRELEEVVKNLDRKPAGAIKAKV-VKRDPYIDNVEEQLRERFKTTVXXXX 239 A++ V+++WSVR LE V L + + KV + + +I E QLRE++ T V Sbjct: 189 AKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLREQYGTKVDISI 248 Query: 240 XXXXXXXXLNYYSAQDLERLLELLG 264 + S D R++E L Sbjct: 249 KKSVGKISFEFDSQDDFVRIIEQLN 273 >CAC3729 [K] COG1475 Predicted transcriptional regulators Length = 283 Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 167/252 (66%), Gaps = 1/252 (0%) Query: 12 IPLGQLRANPYQPRKDFNEDAIQELAESIRQHGVIQPIIVRSVLKGYEIIAGERRFRASQ 71 I L ++ N QPRK+F+ + I +LAESI++HG++QP++++ K Y I+AGERRFRA++ Sbjct: 31 ISLNLIKPNEGQPRKNFDSEKIVQLAESIKEHGIVQPLVLKKKGKQYIIVAGERRFRAAK 90 Query: 72 YCGKATIPAVVRSLSDQQVMEIALIENLQRENLNAMEIAVAYQGLMDQFALTQEELSLKV 131 G +PAV+ ++++++EI+LIEN+QRE+LN +E A+AY+ L++ F LTQE+LS ++ Sbjct: 91 SLGLKEVPAVIIDATEKEILEISLIENIQREDLNPIEEALAYKRLLEDFNLTQEQLSQRI 150 Query: 132 GKSRSHIANFLRLLSLPEEVKEYVSRGTISMGHARAIVALKDPETVKQLAEQCVEQQWSV 191 GKSR IAN +RLL+L E V+EY+ G IS GH R ++++ D E +++++ +++ SV Sbjct: 151 GKSRVAIANCIRLLNLDERVQEYLIDGVISEGHGRVLLSIADKELQYKISQKIIDEDLSV 210 Query: 192 RELEEVVKNLDRKPAGAIKAKVVKRDPYIDNVEEQLRERFKTTVXXXXXXXXXXXXLNYY 251 R E+++K ++ + + + YI ++ +L F T V + YY Sbjct: 211 RATEKLLKTY-KETTEKNDEESKEENQYIVDIRNKLEGYFGTKVLLKTNKNKGKIEIEYY 269 Query: 252 SAQDLERLLELL 263 S +DL+R++++L Sbjct: 270 SNEDLQRIIDIL 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,926,710 Number of extensions: 663859 Number of successful extensions: 1683 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 1694 Number of HSP's successfully gapped: 43 Length of query: 265 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 161 Effective length of database: 26,383,695 Effective search space: 4247774895 Effective search space used: 4247774895 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)