BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0008.p (166 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0097 [L] COG0629 Single-stranded DNA-binding protein 177 1e-44 lin2402 [L] COG0629 Single-stranded DNA-binding protein 174 4e-44 lin0038 [L] COG0629 Single-stranded DNA-binding protein 171 6e-43 BS_ssb [L] COG0629 Single-stranded DNA-binding protein 167 8e-42 L0302 [L] COG0629 Single-stranded DNA-binding protein 158 3e-39 >lin0097 [L] COG0629 Single-stranded DNA-binding protein Length = 159 Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/166 (51%), Positives = 113/166 (68%), Gaps = 7/166 (4%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++NR++L+GRLT+DP+LRYTPAG AV FTLAV+R FT Q GEREADFI V WR+ AE Sbjct: 1 MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQQGEREADFIQCVVWRKPAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 AN+L+KG + V+GRIQ RNYE+++GKRV+VTEV+A++V+FLE + EG +S N Sbjct: 61 AANFLKKGSMAGVDGRIQTRNYEDSDGKRVFVTEVVAESVQFLEPRNHAEGA---TSNNY 117 Query: 121 PEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 E +Y D F+ +GKPIDI+ DDLPF Sbjct: 118 QNEANY----SNNNKTSSYRADTSQKSDSFANEGKPIDINPDDLPF 159 >lin2402 [L] COG0629 Single-stranded DNA-binding protein Length = 160 Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 113/166 (68%), Gaps = 6/166 (3%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++NR++L+GRLT+DPELRYTPAGVAV FTLAV+R F GE+EADFI V WR+ AE Sbjct: 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNGQGEQEADFIQCVVWRKPAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 AN+L+KG L V+GR+Q RNYE N+GKRVYVTE++A++V+FLES QN GG+ +S N Sbjct: 61 VANFLKKGSLAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLESKQNGAGGS--TSNNN 118 Query: 121 PEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 E +Y D F+ +G P+DI+ DDLPF Sbjct: 119 QSETNYSNDNKTSSYRADRSQNG----DSFANEGAPVDINPDDLPF 160 >lin0038 [L] COG0629 Single-stranded DNA-binding protein Length = 179 Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 111/179 (62%), Gaps = 13/179 (7%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++NR++L+GRLT+DPELRYTPAGVAV FTLAV+R FT Q GEREADFI V WR+ AE Sbjct: 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLE-------------SSQ 107 AN+L+KG + V+GR+Q RNYE N+GKRVYVTE++A++V+FLE Sbjct: 61 VANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGG 120 Query: 108 NREGGNAPSSGNVPEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 N N + P+ DPF+ DGKPIDISDDDLPF Sbjct: 121 NNNNNYNNGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF 179 >BS_ssb [L] COG0629 Single-stranded DNA-binding protein Length = 178 Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 9/172 (5%), Positives = 28/172 (16%), Gaps = 6/172 (3%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 + +R + L + + + + ++ + T Sbjct: 1 MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVL 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLE-SSQNREGGNAPSSGN 119 +G + K + + + G Sbjct: 61 FGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGG 120 Query: 120 VPEEPSYXXXXXXX-----XXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 P + Q ++ + F Sbjct: 121 APAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDF 172 >L0302 [L] COG0629 Single-stranded DNA-binding protein Length = 166 Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 81/166 (48%), Positives = 100/166 (60%) Query: 1 LLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAET 60 ++N ++L+GR+TRDPELRYTP AV F+LAV+R F NGEREADFI V WRQ AE Sbjct: 1 MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAEN 60 Query: 61 CANYLRKGRLTAVEGRIQVRNYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSSGNV 120 AN+ +KG L V GRIQ RNYEN +G+RVYVTEV+AD+ + LES REG +S Sbjct: 61 LANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGS 120 Query: 121 PEEPSYXXXXXXXXXXXXXXXXXXXXQDPFSGDGKPIDISDDDLPF 166 PS +D P++ISDDDLPF Sbjct: 121 YSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEISDDDLPF 166 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,799,402 Number of extensions: 395657 Number of successful extensions: 630 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 595 Number of HSP's successfully gapped: 40 Length of query: 166 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 68 Effective length of database: 27,075,699 Effective search space: 1841147532 Effective search space used: 1841147532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 112 (47.8 bits)