BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0007.p
         (105 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ywbH [R] COG1380 Putative effector of murein hydrolase LrgA        119   1e-27
STM4271 [R] COG1380 Putative effector of murein hydrolase LrgA         70   7e-13
SA2329 [R] COG1380 Putative effector of murein hydrolase LrgA          67   8e-12
VC1233 [R] COG1380 Putative effector of murein hydrolase LrgA          59   2e-09
SA0252 [R] COG1380 Putative effector of murein hydrolase LrgA          56   1e-08

>BS_ywbH [R] COG1380 Putative effector of murein hydrolase LrgA
          Length = 128

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 78/104 (75%)

Query: 2   LVNVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVM 61
           L+N +T  LHI IPGSIIG+++LF LL   II+L W+E GA+WLL ELLLFFIPSA+GV+
Sbjct: 20  LINWVTALLHINIPGSIIGIVILFTLLHFNIIKLEWIELGAAWLLGELLLFFIPSAVGVI 79

Query: 62  KYSKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRES 105
           +Y  ++   G+ +L VVI+ TF VM S+G LT  I+K KE++ +
Sbjct: 80  EYGDIMSKFGVSILLVVIISTFVVMVSTGTLTQLIAKRKEKKHT 123


>STM4271 [R] COG1380 Putative effector of murein hydrolase LrgA
          Length = 136

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 65/98 (66%)

Query: 6   LTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVMKYSK 65
           L  +LH+P+P +++GM+L+  L+   II L+WV AGA WLLAE+LLFF+P+ + V+ Y+ 
Sbjct: 35  LVSWLHLPLPANLVGMVLMLALIVCRIIPLSWVRAGARWLLAEMLLFFVPAVVAVVNYAH 94

Query: 66  LLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERR 103
           LL  DG ++ +V+ + T  V+ ++  +   + + +  R
Sbjct: 95  LLLVDGWRIFSVIAISTLMVLGATAWVVDKVYRYEMSR 132


>SA2329 [R] COG1380 Putative effector of murein hydrolase LrgA
          Length = 131

 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 1/95 (1%)

Query: 10  LHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVMKYSKLLES 69
            H+P+ GSI+G+ L +LLL+  I+ L WVE GA++LL  ++ FFIPS +G+M  +  +  
Sbjct: 31  FHLPLAGSIVGLFLFYLLLQFKIVPLTWVEDGANFLLKTMVFFFIPSVVGIMDVASEITL 90

Query: 70  DGLQVLAVVIVGTFAVMASSGLLTGAIS-KAKERR 103
           + +   AV+I+GT  V  SSG +   +S K K R+
Sbjct: 91  NYILFFAVIIIGTCIVALSSGYIAEKMSVKHKHRK 125


>VC1233 [R] COG1380 Putative effector of murein hydrolase LrgA
          Length = 129

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 60/97 (61%)

Query: 6   LTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVMKYSK 65
           L  +L I IPGSIIG+++LF L+ SG++ + WV+  A+  +  ++L F+P ++G+M +  
Sbjct: 30  LQTWLGIAIPGSIIGLLILFGLMASGLVPVEWVKPSATLFIRYMILLFVPISVGLMVHFD 89

Query: 66  LLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKER 102
            L ++   +LA  I GT  VM + GL+   + K  ++
Sbjct: 90  TLLANLAPILASAIGGTLIVMVTLGLILDRMLKKGKK 126


>SA0252 [R] COG1380 Putative effector of murein hydrolase LrgA
          Length = 145

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 57/101 (56%)

Query: 4   NVLTPFLHIPIPGSIIGMILLFLLLESGIIRLNWVEAGASWLLAELLLFFIPSAIGVMKY 63
            ++  F+ IP+P S+IG++LLF+LL +G ++L  VE   + L   + L F+P+ I V+  
Sbjct: 28  KIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNS 87

Query: 64  SKLLESDGLQVLAVVIVGTFAVMASSGLLTGAISKAKERRE 104
             ++      ++ ++IV T  ++  +G +T  I K   R +
Sbjct: 88  LGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSK 128


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.326    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,173,655
Number of extensions: 280493
Number of successful extensions: 872
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 12
Length of query: 105
Length of database: 38,378,431
Length adjustment: 73
Effective length of query: 32
Effective length of database: 29,959,049
Effective search space: 958689568
Effective search space used: 958689568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)