BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0001.p (555 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein 143 6e-34 BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein 133 6e-31 BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein 128 3e-29 BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein 126 9e-29 BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein 116 9e-26 >BS_tlpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 143 bits (361), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 0/518 (0%), Positives = 0/518 (0%), Gaps = 49/518 (9%) Query: 56 DSSKVSAIEERIGWIVAHKP---IFKE--AFILSLDGKILAADTSLKKRGYKAGDDFYFT 110 Sbjct: 174 ------ 227 Query: 111 EEDKAMITTMKHSAYSKVYTYQG--------TSLKTGY---GPIYQD--HDPTKPIIALM 157 Sbjct: 228 ---- 283 Query: 158 AINFDGPLIQERTLDIIVQPFXXXXXXXXXXXXXXXXXXRRMVSPLTKLSASVNTIARGD 217 Sbjct: 284 -------------------- 323 Query: 218 LTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTSMLVXXXXXXXXXXXXXTNRAG 277 Sbjct: 324 - 382 Query: 278 EHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIAGNADSAKDTAANNAQKARLGR 337 Sbjct: 383 442 Query: 338 QSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVGTISSXXXXXXXXXXXXXXXXX 397 Sbjct: 443 502 Query: 398 XXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIISQMDNAGETMKRSTEEMEQGKE 457 Sbjct: 503 562 Query: 458 LILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGGLVESIQKIVTVSNYTAEGAMT 517 Sbjct: 563 622 Query: 518 LSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 Sbjct: 623 660 >BS_mcpA [NT] COG0840 Methyl-accepting chemotaxis protein Length = 661 Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 185/359 (51%), Gaps = 1/359 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R + +PL +L S I+ GDLT E + SKDE+G L + FN+MA SLR +I + D+ Sbjct: 303 RSITTPLKQLVGSSKRISEGDLT-ETIDIRSKDELGELGKSFNNMASSLRSLIHAIQDSV 361 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V T++A EH + + G Q +++E + + + M+ +T +A Sbjct: 362 DNVAASSEELTASAAQTSKATEHITLAIEQFSNGNEKQNENIETAAEHIYQMNDGLTNMA 421 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 ++ D++ + + A G + + T Q+ ++ +S+ + ++ L + SK+I NI+ Sbjct: 422 QASEVITDSSVQSTEIASEGGKLVHQTVGQMNVIDKSVKEAEQVVRGLETKSKDITNILR 481 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I+ F+VVA VRKLA +SA SA +I L+ I+ Sbjct: 482 VINGIADQTNLLALNAAIEAARAGEYGRGFSVVAEEVRKLAVQSADSAKEIEGLIIEIVK 541 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 +++ + + +E++ G ++ SF I + ++ + Q +S TV++L + Sbjct: 542 EINTSLGMFQSVNQEVQTGLDITDKTEMSFKRISEMTNQIAGELQNMSATVQQLSASSEE 601 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 + + + I ++S ++ ++A+++EQLA+MEE+ SSA LSS+AE+L+ + +RFK+ Sbjct: 602 VSGASEHIASISKESSAHIQDIAASAEEQLASMEEISSSAETLSSMAEELRDMTKRFKI 660 >BS_mcpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 662 Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 180/359 (50%), Gaps = 1/359 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 R + PL +L S TI+RGDLT E + +SKDE+G L FN+M SLR +I+ + ++ Sbjct: 304 RSITKPLKRLVQSSKTISRGDLT-ETIEIHSKDELGELGESFNEMGQSLRSLISAIQNSV 362 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V T++A EH + + G Q + +E S + M+ + +++ Sbjct: 363 NNVAASSEQLTASAGQTSKATEHITMAIEQFSNGNEEQSRKVESSSHQLNLMNEGLQQVS 422 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 + + + + A G + + T Q+ +++S+ ++ L SK+I +I+ Sbjct: 423 QTSSDITKASIQSTEIAGTGEKFVQQTGGQMNSINQSVQQAEAVVKGLEGKSKDITSILR 482 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I+ F+VVA VRKLA +SA SA +I +L+ I++ Sbjct: 483 VINGIADQTNLLALNAAIEAARAGESGRGFSVVAEEVRKLAVQSADSAKEIEKLIQEIVA 542 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 ++D + K +E++ G + + SF I + ++++ + Q ++ TV +L + Sbjct: 543 EIDTSLHMFKEVNQEVQSGLVVTDNTKESFQSIFSMTNEIAGKLQTMNSTVEQLSDRSQH 602 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 + ++ I VS ++ ++A+++EQLA+MEE+ SSA L+ +AE+L+ L ++FK+ Sbjct: 603 VSAAVSGIADVSKESSASIQDIAASAEEQLASMEEISSSATTLAQMAEELRDLTKQFKI 661 >BS_tlpB [NT] COG0840 Methyl-accepting chemotaxis protein Length = 83 Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 0/359 (0%), Positives = 0/359 (0%), Gaps = 1/359 (0%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 Sbjct: 303 - 361 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 Sbjct: 362 421 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 Sbjct: 422 481 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 Sbjct: 482 541 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 Sbjct: 542 601 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 Sbjct: 602 660 >BH0876_2 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 359 Score = 116 bits (291), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 169/359 (47%) Query: 197 RRMVSPLTKLSASVNTIARGDLTHEPLLFNSKDEIGTLARDFNDMALSLRDIITQVNDTS 256 + + PL +L+ +A GDLT E + ++DEIG L F M +LR +I ++ + Sbjct: 1 KMITKPLARLTKVARHVADGDLTTERVKIKNRDEIGQLNESFEAMKENLRGLIQRILQNA 60 Query: 257 MLVXXXXXXXXXXXXXTNRAGEHSANVTIELAEGAGTQLKDLEGSYQAVQDMSRFITEIA 316 V T+ A E + + ++ GA Q + S + +++M++ +TE+ Sbjct: 61 DQVAVSSEQLSASAEQTSSATEQTTSAIESISRGADMQTSAAQTSVKTLEEMNQIVTEMT 120 Query: 317 GNADSAKDTAANNAQKARLGRQSLDSTTSQIGIVSESIHDLSDIIATLGSHSKEIENIVG 376 A + A A G + T + + ES+ I TL S++I I+ Sbjct: 121 DGAKQIESNANLTLTYANEGDTLVKETVENMQSIDESVKGSDQAIQTLSKRSEDIVEILD 180 Query: 377 TISSXXXXXXXXXXXXXXXXXXXXXXXXXFAVVAGSVRKLAERSAASAGQIGELVSLIIS 436 I S FAVVA VRKLAE S+ S +I +L+ ++ Sbjct: 181 VIQSIAEQTNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAEESSQSTKKIHDLIDEMVK 240 Query: 437 QMDNAGETMKRSTEEMEQGKELILSAGRSFSEIETSVSDMSSQSQQISETVRELGLIAGG 496 + +N+ E M EE+ G + F I S+ ++SQ + ++ RE+ + Sbjct: 241 ETNNSVEKMGLVKEEVSVGLKTAAQTSEKFHSIVASIQGVTSQVEAMNRVTREVAEKSTE 300 Query: 497 LVESIQKIVTVSNYTAEGAMTLSATSQEQLAAMEEVESSAGFLSSLAEKLQVLVERFKV 555 + S+Q + +V+ +AE + ++SA ++E LA+M+EV +SA L+ +AE LQ +++FK+ Sbjct: 301 VATSVQNMASVAEESAEQSSSVSAVAEETLASMQEVTASANQLTEMAETLQEAIKQFKL 359 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,807,629 Number of extensions: 1078613 Number of successful extensions: 5825 Number of sequences better than 1.0e-05: 767 Number of HSP's gapped: 3701 Number of HSP's successfully gapped: 768 Length of query: 555 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 444 Effective length of database: 25,576,357 Effective search space: 11355902508 Effective search space used: 11355902508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)