BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0005.p (171 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZnrdG [O] COG0602 Organic radical activating enzymes 129 2e-30 nrdG [O] COG0602 Organic radical activating enzymes 129 2e-30 ZnrdG [O] COG0602 Organic radical activating enzymes 129 2e-30 ECs5214 [O] COG0602 Organic radical activating enzymes 129 2e-30 STM4451 [O] COG0602 Organic radical activating enzymes 129 2e-30 >ZnrdG [O] COG0602 Organic radical activating enzymes Length = 154 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 7/154 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN YYP I G G R LF+SGC H CPGC+N TW N G+PFT + +II ++ Sbjct: 1 MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN 60 Query: 61 ANPL-LDGLTLAGGDPFF--SAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPE 117 + G++L+GGDP + + +Q +R+ P +W++TGY +EL AA + Sbjct: 61 DTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIWVWTGYKLDELNAA----Q 116 Query: 118 WNLLALCQVVIDGRFVEELKDTTLPYRGSSNQRI 151 ++ L V++DG+FV++LKD +L +RGSSNQ + Sbjct: 117 MQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVV 150 >nrdG [O] COG0602 Organic radical activating enzymes Length = 154 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 7/154 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN YYP I G G R LF+SGC H CPGC+N TW N G+PFT + +II ++ Sbjct: 1 MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN 60 Query: 61 ANPL-LDGLTLAGGDPFF--SAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPE 117 + G++L+GGDP + + +Q +R+ P +W++TGY +EL AA + Sbjct: 61 DTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIWVWTGYKLDELNAA----Q 116 Query: 118 WNLLALCQVVIDGRFVEELKDTTLPYRGSSNQRI 151 ++ L V++DG+FV++LKD +L +RGSSNQ + Sbjct: 117 MQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVV 150 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 7/154 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN YYP I G G R LF+SGC H CPGC+N TW N G+PFT + +II ++ Sbjct: 1 MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN 60 Query: 61 ANPL-LDGLTLAGGDPFF--SAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPE 117 + G++L+GGDP + + +Q +R+ P +W++TGY +EL AA + Sbjct: 61 DTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIWVWTGYKLDELNAA----Q 116 Query: 118 WNLLALCQVVIDGRFVEELKDTTLPYRGSSNQRI 151 ++ L V++DG+FV++LKD +L +RGSSNQ + Sbjct: 117 MQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVV 150 >ECs5214 [O] COG0602 Organic radical activating enzymes Length = 154 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 7/154 (4%) Query: 1 MNICGYYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMA 60 MN YYP I G G R LF+SGC H CPGC+N TW N G+PFT + +II ++ Sbjct: 1 MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSGQPFTKAMEDQIINDLN 60 Query: 61 ANPL-LDGLTLAGGDPFF--SAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPE 117 + G++L+GGDP + + +Q +R+ P +W++TGY +EL AA + Sbjct: 61 DTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIWVWTGYKLDELNAA----Q 116 Query: 118 WNLLALCQVVIDGRFVEELKDTTLPYRGSSNQRI 151 ++ L V++DG+FV++LKD +L +RGSSNQ + Sbjct: 117 MQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVV 150 >STM4451 [O] COG0602 Organic radical activating enzymes Length = 154 Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 7/149 (4%) Query: 6 YYPESINEGEGMRAVLFLSGCRHRCPGCFNPKTWNFNYGEPFTLERQREIIAEMAANPL- 64 YYP I G G R LF+SGC H CPGC+N TW N G+PFT E + +IIA++ + Sbjct: 6 YYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRLNSGQPFTKEMEDKIIADLNDTRIH 65 Query: 65 LDGLTLAGGDPFF--SAEEAAGFIQELRSVLPDYSVWIYTGYTYEELTAAPGSPEWNLLA 122 G++L+GGDP + + +Q + + P +W++TGY +EL AA + ++ Sbjct: 66 RQGISLSGGDPLHPQNVPDILALVQRIHAECPGKDIWVWTGYKLDELNAA----QMQVVD 121 Query: 123 LCQVVIDGRFVEELKDTTLPYRGSSNQRI 151 L V++DG+FV++LKD L +RGSSNQ + Sbjct: 122 LINVLVDGKFVQDLKDPALIWRGSSNQVV 150 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,171,990 Number of extensions: 538484 Number of successful extensions: 2015 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 1985 Number of HSP's successfully gapped: 16 Length of query: 171 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 72 Effective length of database: 26,960,365 Effective search space: 1941146280 Effective search space used: 1941146280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 112 (47.8 bits)