BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0004.p (661 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC1209 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate... 436 e-122 CAC0480 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate... 430 e-120 MJ0832_5 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphat... 72 4e-12 MJ0832_3 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphat... 70 2e-11 STM0385_2 [T] COG2199 FOG: GGDEF domain 54 7e-07 >CAC1209 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase Length = 346 Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust. Identities = 0/624 (0%), Positives = 0/624 (0%), Gaps = 47/624 (7%) Query: 40 ENANLNGESFSGKMSKFGSEYSKWYARNFTMPPQLVQATLDNVVYVHDLDQYAIGTTNCI 99 E + + +L + D+ V LD Sbjct: 112 EALHD-SLKRLQTDYLDLYQVHWPQRP-TNCFGKLGYSWTDSAPAVSLLDTLDA-LAEYQ 168 Query: 100 FIPFEQLLREGFNTGNGSVRPPNSIMTAMSLVAIIFQSQQNAQYGGVSANKLDFDLAPYV 159 + + T G +R + + Q+ + + V Sbjct: 169 RAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGV 228 Query: 160 TKSFAKLFRKGLEYFEEGTAGEIGGEVTMSRSDLAEQYPRAFRFALKETESETLQAAESM 219 G+ + Sbjct: 229 ELLAYSC-LGFGTLT---------GKYLNGAKP-------------AGARNTLFSRFTRY 265 Query: 220 IHNLNTMSSRSGGQIPFTSINYGTCTSPEGQLVISSLLMATMNGLGSGETPVFPIQIFKC 279 + + I + + + + + Sbjct: 266 SGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLE 325 Query: 280 KQGVNQQQGDPNYELFLKAAECSARRLYPNFANLDAPLNLQYYDPADPDTEFATMGCRTR 339 Sbjct: 326 --- 382 Query: 340 VLGDRFGRNHCSGKGNLSFNTLNLVRLGLAYGIATGRRLAADEEGFYDDLNHYMDIALEG 399 Sbjct: 383 -------- 434 Query: 400 LLHRFRIQASQKAKASDFMMREGVWEGGKALAPEDSVGELLKHGSLSIGFIGMAECMKAM 459 Sbjct: 435 494 Query: 460 YGKHHGEDMEIHAKALAIVRHMREYCDRKSEELNLNITLFATPAEGLSGKFTKVDRKVIG 519 Sbjct: 495 554 Query: 520 SIPGVTDREYYTNSFHIPVYYELSAAQKISLEAPFHEYCNAGAISYVELNGNARSNPAAF 579 Sbjct: 555 -- 612 Query: 580 VKIIRYALEQ-QVSYFSINHPIDRCSDCG-YEGVIGTNCPSCGAHENDVHIRRLRRVTGY 637 Sbjct: 613 ---- 668 Query: 638 LTGDYQTRFNAAKQAEVRDRVKHL 661 Sbjct: 669 -- 690 >CAC0480 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase Length = 346 Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust. Identities = 0/621 (0%), Positives = 0/621 (0%), Gaps = 44/621 (7%) Query: 40 ENANLNGESFSGKMSKFGSEYSKWYARNFTMPPQLVQATLDNVVYVHDLDQYAIGTTNCI 99 + +L + + + + + V + D Sbjct: 114 LHDSL-KRLQTDYLDLYQVHWPQRPTNC-FGKLGYSWTDSAPAVSLLDTLDALA-EYQRA 170 Query: 100 FIPFEQLLREGFNTGNGSVRPPNSIMTAMSLVAIIFQSQQNAQYGGVSANKLDFDLAPYV 159 + G +V I + V ++ + Sbjct: 171 GKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVEL 230 Query: 160 TKSFAKLFRKGLEYFEEGTAGEIGGEVTMSRSDLAEQYPRAFRFALKETESETLQAAESM 219 T + E Sbjct: 231 LAY-----SCLGFGTLT----GKYLN-----GAKPAGARN------TLFSRFTRYSGEQT 270 Query: 220 IHNLNTMSSRSGGQIPFTSINYGTCTSPEGQLVISSLLMATMNGLGSGETPVFPIQIFKC 279 + + + + + + L TM+ L + + Sbjct: 271 QKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDV 330 Query: 280 KQGVNQQQGDPNYELFLKAAECSARRLYPNFANLDAPLNLQYYDPADPDTEFATMGCRTR 339 Sbjct: 331 --- 387 Query: 340 VLGDRFGRNHCSGKGNLSFNTLNLVRLGLAYGIATGRRLAADEEGFYDDLNHYMDIALEG 399 Sbjct: 388 -------- 439 Query: 400 LLHRFRIQASQKAKASDFMMREGVWEGGKALAPEDSVGELLKHGSLSIGFIGMAECMKAM 459 Sbjct: 440 499 Query: 460 YGKHHGEDMEIHAKALAIVRHMREYCDRKSEELNLNITLFATPAEGLSGKFTKVDRKVIG 519 Sbjct: 500 559 Query: 520 SIPGVTDREYYTNSFHIPVYYELSAAQKISLEAPFHEYCNAGAISYVELNGNARSNPAAF 579 Sbjct: 560 -- 617 Query: 580 VKIIRYALEQ-QVSYFSINHPIDRCSDCG-YEGVIGTNCPSCGAHENDVHIRRLRRVTGY 637 Sbjct: 618 ---- 673 Query: 638 LTGDYQTRFNAAKQAEVRDRV 658 Sbjct: 674 -- 692 >MJ0832_5 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase Length = 346 Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 6/161 (3%), Positives = 25/161 (15%), Gaps = 18/161 (11%) Query: 507 SGKFTKVDRK---------VIGSIPGVTDREYYTNSFHIPVYYELSAAQKISLEAPFHEY 557 + + G + + + L ++ P E Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSE-ADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 558 CNAGAISYVELNGNARSNPAAFVKIIRYALEQQVSYFSINHPIDRCSDCGYE-GVIGTNC 616 + + + + + + I E Sbjct: 62 QGLTETYVG-NWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 617 PSCGAHENDVHIRRLRRVTGYLTGDYQTRFNAAKQAEVRDR 657 + + ++ + + Sbjct: 121 LQTDYLD----LYQVHWPQRPTNC--FGKLGYSWTDSAPAV 155 >MJ0832_3 [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase Length = 346 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 14/261 (5%), Positives = 37/261 (14%), Gaps = 34/261 (13%) Query: 248 EGQLVISSLLMATMNGLGSGETPVFPIQIFKCKQGVNQQQGDPNYELFLKAAECSARRLY 307 + ++ + P Q N + K S Sbjct: 35 QLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNW---LAKHGSREKLIIASKVSGP 91 Query: 308 PNFANLDAPLNLQYYDPADPDTEFATMGCRTRVLGDRFGRNHCSG--KGNLSFNTLNLVR 365 + + + + + N Sbjct: 92 SRNNDKG---------IRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFG 142 Query: 366 LGLAYGIATGRRLAADEEGFYDDLNHYMDIALEGLLHRFRIQASQ--KAKASDFMMREGV 423 + D L+ +A + R A + Sbjct: 143 KLGY---SWT-----DSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHL-- 192 Query: 424 WEGGKALAPEDSVGELLKHGSLSIGFIGMAECMKAMYGKHHGEDMEIHAKALAIVRHMRE 483 + + + + + + L + Sbjct: 193 ADKHDLPRIVTIQN--------PYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGK 244 Query: 484 YCDRKSEELNLNITLFATPAE 504 Y + N Sbjct: 245 YLNGAKPAGARNTLFSRFTRY 265 >STM0385_2 [T] COG2199 FOG: GGDEF domain Length = 171 Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 0/303 (0%), Positives = 0/303 (0%), Gaps = 41/303 (13%) Query: 346 GRNHCSGKGNLSFNTLNLVRLGLAYGIATGRRLAADEEGFYDDLNHYMDIALEGLLHRFR 405 Sbjct: 354 ---------------- 397 Query: 406 IQASQKAKAS-DFMMREGVWEGGKALAPEDSVGELLKHGSL-SIGFIGMAECMKAM---- 459 Sbjct: 398 --- 454 Query: 460 ---YGKHHGEDMEIHAKALAIVRHMREYCDRKSEELNLNITLFATPAEGLSGKFTKVDRK 516 Sbjct: 455 -- 512 Query: 517 VIGSIPGVTDREYYTNSFHIPVYYELSAAQKISLEAPFHEYCNAGAISYVELNGNARSNP 576 Sbjct: 513 ---- 568 Query: 577 AAFVKIIRYALEQQVSYFSINHPIDRCSDCGYEGVIGTNCPSCGAHENDVHIRRLRRVTG 636 Sbjct: 569 ------- 621 Query: 637 YLT 639 Sbjct: 622 624 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 47,737,891 Number of extensions: 1921276 Number of successful extensions: 5515 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 5505 Number of HSP's successfully gapped: 5 Length of query: 661 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 548 Effective length of database: 25,345,689 Effective search space: 13889437572 Effective search space used: 13889437572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 119 (50.4 bits)