BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0009.p
         (191 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RP335 [QR] COG0500 SAM-dependent methyltransferases                    84   1e-16

>RP335 [QR] COG0500 SAM-dependent methyltransferases
          Length = 373

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 19/171 (11%)

Query: 5   IKVKDFL-PVLLEHLKFAETILDVGSGTGTLLERYEA-SVVIGLDIHRPY--LLHRKYTA 60
           IK+K+F+ PV         +I+D+G G     ++Y   +++I ++ ++ Y  +L R  + 
Sbjct: 19  IKIKEFISPVY--------SIMDIGCGIRP--QQYIVPNLLICVEPYKEYTEILKRNLSG 68

Query: 61  SHIIPVHADARHIDKLFLPGTFSAVTLIDSLEHFTMSEGKELLRKAEVIAAGRVVVFTPR 120
           ++ I +  DA+    +    +  ++ LID +EH     GKE+L K   IA  ++++FTP 
Sbjct: 69  TNSIIIPLDAKSALSILPDKSIDSIFLIDVIEHIPKEIGKEILIKCTRIARRQIIIFTPL 128

Query: 121 GFFPQE--GTDHYHLQGEYYQKHRSGWEPEDFLGLGYAVTVLKDFH-HAEN 168
           GF PQE    D ++L G  +Q+H+SGW PEDF   G+ +   K+ H H  N
Sbjct: 129 GFMPQEVHEIDGWNLHGGAWQEHKSGWYPEDF--PGWNIIGCKELHTHNSN 177


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,936,393
Number of extensions: 735021
Number of successful extensions: 1533
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1532
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 91
Effective length of database: 26,845,031
Effective search space: 2442897821
Effective search space used: 2442897821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)