BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0009.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 204 2e-52 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 178 8e-45 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 175 6e-44 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 166 4e-41 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 152 8e-37 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/270 (44%), Positives = 166/270 (61%), Gaps = 7/270 (2%) Query: 15 IFAIL--LAVVFLSPFYLVLSNSVKRLKEILIDAASFPQVFHW---DNYSKVWDAINFPQ 69 ++AIL +VFL P + NS K I D S P W +N+ F + Sbjct: 36 VYAILAFFTIVFLGPILFIFINSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLE 95 Query: 70 AFWNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLMLQLVRV 129 A S IT+LSVI IV FS+M AY I R + + + ++ L V +MIIPFQ +M V++ Sbjct: 96 ATLWSFIITILSVIVIVFFSAMTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVKI 155 Query: 130 TSMLELRGELYGIVACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGVFFKIVF 189 ML L + GIV YLGFG LSVF+F GF+KS+P+++EEAA +DG P +F++V+ Sbjct: 156 ADMLHLNNPI-GIVVLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVW 214 Query: 190 PLLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWDLA-LAG 248 P+L P +TV ILN +W+WNDYLLP LVIG + T+PV + F G + A +A Sbjct: 215 PMLKPTAITVAILNAMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAM 274 Query: 249 LVMAITPILLFFLSLQRYIVEGVTAGSIKG 278 LV+AI PI++F+ S QR+I+EGV AG++KG Sbjct: 275 LVLAIIPIVIFYFSTQRHIIEGVAAGAVKG 304 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 162/256 (63%), Gaps = 4/256 (1%) Query: 25 LSPFYLVLSNSVKRLKEILI-DAASFPQVFHWDNYSKVWDAINFPQAFWNSLQITVLSVI 83 L P++L+ + S K + E++ + + P + NY + + A+NF ++F SL +T++S I Sbjct: 34 LFPYFLMTNTSFKNITELITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNI 93 Query: 84 FIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMIIPFQSLMLQLVRVTSMLELRGELYGIV 143 I+ FSS+ A+Q+ R + +F + + +I+PFQ++ML L+ + ++ L+G++ Sbjct: 94 SIIFFSSITAWQLARSKRLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFL-NLFGLI 152 Query: 144 ACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDGSSPYGVFFKIVFPLLMPIIVTVIILN 203 Y GFGMP+S+F+ HGF+ ++P+ LEE ++V+G P V+FKI+ PLL PII TV I+N Sbjct: 153 FMYTGFGMPISIFMMHGFLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAIIN 212 Query: 204 TLWIWNDYLLPVLVIGGNKD--LTTLPVAVTKFFGQYTKKWDLALAGLVMAITPILLFFL 261 T+WIWND+LLP LV N TT+ G Y + +AGL + I PI++FF+ Sbjct: 213 TIWIWNDFLLPYLVYLSNSHSPTTTIIRLQEGLVGTYGTDFTAIMAGLTILIIPIVIFFI 272 Query: 262 SLQRYIVEGVTAGSIK 277 +Q+ I+ G+T G+IK Sbjct: 273 VMQKNIISGITNGAIK 288 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 166/267 (62%), Gaps = 7/267 (2%) Query: 15 IFAILLAVVFLSPFYLVLSNSVKRLKEILIDAASFPQVFHWDNYSKVW-DAINFPQAFWN 73 I IL +V+ L P L +S K K+I+ + FP F WDN+S++ D I +WN Sbjct: 15 ILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSRLLADGIG--GYYWN 72 Query: 74 SLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSF--VFLLLVSAMIIPFQSLMLQLVRVTS 131 S+ ITVLS++ +++F MAAY I R S+ +F ++ LL+ + +PFQ +M+ + + S Sbjct: 73 SVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMS 132 Query: 132 MLELRGELYGIVACYLGFGMPLSVFLFHGFIK-SVPIELEEAARVDGSSPYGVFFKIVFP 190 L L +G++ YL + +P ++FL+ G+IK S+P L+EAA +DG++ + +F+I+FP Sbjct: 133 KLGL-ANTFGLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFP 191 Query: 191 LLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQYTKKWDLALAGLV 250 ++ P+ T +I+N LW WND++LP+LV+ + + TLP+ + GQY + + A V Sbjct: 192 MMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYV 251 Query: 251 MAITPILLFFLSLQRYIVEGVTAGSIK 277 + I I + +L QR+I+ G++ G++K Sbjct: 252 VGIISITIVYLFFQRHIISGMSNGAVK 278 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 170/286 (59%), Gaps = 18/286 (6%) Query: 1 MQTSRYRLNHFILEIFAILLAVVFLSPFYLVLSNSVKRLKEILIDAAS---FPQVFHWDN 57 M+ +R + + I+ + A ++A PFY++L+ S+K D +S FP + N Sbjct: 1 MRAARTK-SMRIITLLAAIVACAHFIPFYILLTTSLKAKG----DYSSKWIFPADISFHN 55 Query: 58 YSKVWDAINFPQAFWNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMII 117 +S+ W+ + +F N++ IT S + +++F S+AAY + R+ ++ N VF LL+S MII Sbjct: 56 FSEAWERASLGNSFINTMIITGFSALLLIIFGSLAAYPLARRETKLNKAVFALLISIMII 115 Query: 118 PFQSLMLQLVRV---TSMLELRG-ELYGIVACYLGFGMPLSVFLFHGFIKS-VPIELEEA 172 P + M+ L R+ M+ ++ A Y MPL+VFL+ GFI+S +P EL EA Sbjct: 116 PPLTSMVPLYRMVVDAGMVNTHAIAIFINTAAY----MPLTVFLYSGFIRSTIPKELVEA 171 Query: 173 ARVDGSSPYGVFFKIVFPLLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVT 232 AR+DG+ +FF IVFPLL PI T+ I++ ++IWNDY + + K + TL VA+ Sbjct: 172 ARIDGAGMLKIFFTIVFPLLKPITATICIISCVFIWNDYQFAIFFLQDQK-VQTLTVAMA 230 Query: 233 KFFGQYTKKWDLALAGLVMAITPILLFFLSLQRYIVEGVTAGSIKG 278 FFG+ L A +MA+ P+++ FL+LQ+Y + G+++G++KG Sbjct: 231 GFFGENANNLHLVAAAALMAMLPMVVLFLALQKYFIAGLSSGAVKG 276 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 159/281 (56%), Gaps = 11/281 (3%) Query: 2 QTSRYRLNHFILEIFAILLAVVFLS--PFYLVLSNSVKRLKEILIDAAS--FPQVFHWDN 57 Q S +R L ++ +L + F++ P ++S ++K E + + P DN Sbjct: 6 QNSPWR----TLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDN 61 Query: 58 YSKVWDAINFPQAFWNSLQITVLSVIFIVMFSSMAAYQIVRKPSRFNSFVFLLLVSAMII 117 + KVW+++ F Q +NS ++VL+V ++F S+AAY + R ++F+ +VS ++I Sbjct: 62 FFKVWNSLPFGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMI 121 Query: 118 PFQSLMLQLVRVTSMLELRGELYGIVACYLGFGMPLSVFLFHGFIKSVPIELEEAARVDG 177 PFQ +M+ L +T L LR G++ + +FL VP E+EEAAR+DG Sbjct: 122 PFQIVMIPLYILTVQLGLRNTYLGMM--FPSLASAFGIFLLRQAFMGVPKEIEEAARMDG 179 Query: 178 SSPYGVFFKIVFPLLMPIIVTVIILNTLWIWNDYLLPVLVIGGNKDLTTLPVAVTKFFGQ 237 SS G+++ I+ P + P +VT+ I + W+D+L P++VI +++L TLP+ V K G Sbjct: 180 SSELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVI-QDENLYTLPLGVAKLAGT 238 Query: 238 YTKKWDLALAGLVMAITPILLFFLSLQRYIVEGVTAGSIKG 278 ++ W L AG V+AI P+LL FL LQRYIVE +KG Sbjct: 239 FSLDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.145 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,673,174 Number of extensions: 681577 Number of successful extensions: 3074 Number of sequences better than 1.0e-05: 220 Number of HSP's gapped: 2868 Number of HSP's successfully gapped: 221 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)