BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0008.p (435 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2408 [G] COG1653 ABC-type sugar transport system, periplasmic... 94 6e-19 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 89 2e-17 SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 54 7e-07 >Cgl2408 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 443 Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 97/366 (26%), Positives = 153/366 (41%), Gaps = 40/366 (10%) Query: 95 YGALLKAELASGSEPEIFNNGGYTALVPYMDRATDLSNEPWVANLIPTAKTPATVDGKLY 154 Y LKAE+ P +F G + + D D+S+ L T DG++ Sbjct: 72 YEQTLKAEIGKDEAPTLFQVNGPAGFITWQDYMADMSDTEVAKQLTDDIPPLTTEDGEVR 131 Query: 155 GMPMNVEGYGLIYNKDLFTK----AG--------ITEEPKTLSQXXXXXXXXXXXGIT-P 201 G+P VEG+G+IYN ++F K +G IT K GI Sbjct: 132 GVPFAVEGFGIIYNDEIFDKYIATSGAKIKSTDEITSYQKLKEVAEDMQAKKDELGIEGA 191 Query: 202 FEATN----EWWSMGMHLVNVGLAHQPDPKKFIDDLKAGTQTFKDNAVFKQWLDLVDVIF 257 F +T+ E W HL N + + K D F N K++ +L D+ Sbjct: 192 FASTSLTSGEDWRWQTHLANAPIWQEYQDKGVED---TNEIEFSYN---KEYKNLFDLYL 245 Query: 258 DNAQDNKMTTDYAT---QIADFASGKAAMMMQGNW-------TQGDIDKIXXXXXXXXXX 307 +N+ K T +A+FA GKAAM+ GNW T G++ K Sbjct: 246 ENSTVEKSLAPSKTVSDSMAEFAQGKAAMVQNGNWAWSQISETSGNVVKEDKIKFLPMYM 305 Query: 308 XXXXXEEGTILVGVPNNYIVNSKSAHPEE--AKAFLNWLVSSETGKKYLTKEFKFI-PAE 364 E+ I VG N VNS+++ ++ K F++WL +SE GK+++ K+ FI P E Sbjct: 306 GLPDEEKHGINVGTENYLGVNSEASEVDQQATKDFVDWLFTSEAGKEHVVKDLGFIAPFE 365 Query: 365 TNVETDAAD---IGQVAVAVQEQSDKALGWNWDMFPD-GVTQGFGAAMQEYLGGQLNHDQ 420 + + + QVA A+ + WN+ FP FG + +Y G+L + Sbjct: 366 SYTAENTPNDPLSEQVAEAIANKDLTTYPWNFQYFPSQQFKDDFGQDLSQYASGKLKWED 425 Query: 421 LLEKLD 426 +++ + Sbjct: 426 VVKHFN 431 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 21/351 (5%) Query: 95 YGALLKAELASGSEPEIFNNGGYTALVPYM--DRATDLS-----NEPWVANLIPTAKTPA 147 Y +K L + S P+I+ + ++ ++A DLS + W + L+ + TP Sbjct: 75 YKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDWSSQLVQSQITPF 134 Query: 148 TVDGKLYGMPMNVEGYGLIYNKDLFTKAGITEEPKTLSQXXXXXXXXXXXGITPFE-ATN 206 T + K YG+P ++ YNKD+F K + + PKT + G TP T Sbjct: 135 TYENKQYGVPWQMDAKSFFYNKDIFQKLNL-DPPKTWDELIDVSKKLKEHGYTPISFGTK 193 Query: 207 EWWSMGMHLVNVGLAHQPDPKKFIDDLKAGTQTFKDNAVFKQWLDLVDVI-FDNAQDNKM 265 W++ H + D K D A T F D K L +++ + N N + Sbjct: 194 ATWTIS-HYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELMPYFNKHVNSV 252 Query: 266 TTDYATQIADFASGKAAMMMQGNWTQGDIDKIXXXXXXXXXXXXXXXEEGT--ILVGVPN 323 +Y Q F SGK+AM+ +I + ++G+ L G P Sbjct: 253 DHEYVRQ--QFKSGKSAMIYAET---AEIKLVEPVNLGMFPFPEISGQKGSSEALTGAPE 307 Query: 324 NYIVNSKSAHPEEAKAFLNWLVSSETGKKYLTKEFKFIPAE-TNVETDAADIGQVAVAVQ 382 ++++S++ HP+EA FL +L S G+K + K+ + T E +A I + AV Sbjct: 308 GFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKDVGKYSAVQGTATEENATAIQREAVQHI 367 Query: 383 EQSDKALGWNWDMFPD-GVTQGFGAAMQEYLGGQLNHDQLLEKLDKSVQDI 432 + + W +DM D V + +Q+ LGG + Q+++ + K+ + + Sbjct: 368 VDAKSMVPW-FDMDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAKQV 417 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/281 (22%), Positives = 109/281 (38%), Gaps = 38/281 (13%) Query: 96 GALLKAELASGSEPEIFNNGGYTALVPYMDRAT-----DLSNEPWVANLIPTAKTPATVD 150 G +LK + +G P++ N Y + + A DLSN+ ++ + V+ Sbjct: 74 GEVLKTRVLAGDVPDVVNI--YPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVN 131 Query: 151 GKLYGMPMNVEGYGLIYNKDLFTKAGITEEPKTLSQXXXXXXXXXXXGITPF--EATNEW 208 K+Y +P YG+ YNKD F + G+ + P+T + G TPF + W Sbjct: 132 EKVYNVPFTANAYGIYYNKDKFEELGL-KVPETWDEFEQLVKDIVAKGQTPFGIAGADAW 190 Query: 209 WSMGMHLVNVGLA-------------HQPDPKKFIDDLKAGTQTFKDNAVFKQWLDLVDV 255 G + + A QP+ K D + K + ++D+ Sbjct: 191 TLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSD------------PIMKDDIKVMDI 238 Query: 256 IFDNA--QDNKMTTDYATQIADFASGKAAMMMQGNWTQGDIDKIXXXXXXXXXXXXXXXE 313 + N Q N Y I FA G M G+W I++ + Sbjct: 239 LRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEK 298 Query: 314 EGTILVGVPN-NYIVNSKSAHPEEAKAFLNWLVSSETGKKY 353 ++ VG + + +++ + HP+EA AF+ ++ E +KY Sbjct: 299 GQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKY 339 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,256,996 Number of extensions: 983861 Number of successful extensions: 7083 Number of sequences better than 1.0e-05: 3 Number of HSP's gapped: 7086 Number of HSP's successfully gapped: 3 Length of query: 435 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 326 Effective length of database: 25,807,025 Effective search space: 8413090150 Effective search space used: 8413090150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)