BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0020.p
         (157 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1941 [K] COG2002 Regulators of stationary/sporulation gene ex...    75   4e-14
CAC3649 [K] COG2002 Regulators of stationary/sporulation gene ex...    71   6e-13
CAC0310 [K] COG2002 Regulators of stationary/sporulation gene ex...    70   2e-12
CAC3647 [K] COG2002 Regulators of stationary/sporulation gene ex...    69   4e-12
BH3982 [K] COG2002 Regulators of stationary/sporulation gene exp...    64   1e-10

>CAC1941 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 79

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R LDSLGR+V+P E+R T NI   D +E ++ D E IVL+KY    C FC   
Sbjct: 1  MKSTGIVRKLDSLGRVVIPKELRRTFNIAEKDALEIYV-DGEQIVLKKYNPA-CVFCGEA 58

Query: 61 DHVSYYKDQFICNSCLKEL 79
            V  YK + IC  CLKEL
Sbjct: 59 SDVINYKGKKICKKCLKEL 77


>CAC3649 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 84

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILD-EEIIVLRKYTSTECTFCRS 59
          M   G++R +D LGRIV+P E R   N++ GD +E FI + E  IVLRKY +  CTFC S
Sbjct: 1  MNSIGIVRKVDELGRIVIPKETRSQLNVNEGDSLEIFIDEVESHIVLRKY-APGCTFCNS 59

Query: 60 LDHVSYYKDQFICNSCLKEL 79
          L  ++Y+K   +C  C +EL
Sbjct: 60 LSDITYFKGVRVCKHCKEEL 79


>CAC0310 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R +D LGRIV+P+E+R T NI   D +E ++ D E I+L+KY    C FC   
Sbjct: 1  MKSTGVVRRVDELGRIVIPIELRRTLNIAEKDALEIYV-DGEQIILKKYEPA-CIFCGDA 58

Query: 61 DHVSYYKDQFICNSCLKEL 79
            V  Y+ + IC  CL+EL
Sbjct: 59 SDVINYRGKNICKHCLEEL 77


>CAC3647 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTSTECTFCRSL 60
          MK TG++R +D LGRIV+P+E+R T  I   D +E ++ D E I+L+KY    C FC   
Sbjct: 1  MKSTGVVRRVDELGRIVIPIELRRTLEIAEKDALEIYV-DGEQIILKKYQPA-CIFCGDA 58

Query: 61 DHVSYYKDQFICNSCLKEL 79
            V  YK + IC SCL +L
Sbjct: 59 RDVINYKGKNICQSCLNQL 77


>BH3982 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 96

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 1  MKDTGMIRSLDSLGRIVVPVEIRMTRNIDIGDPIEFFILDEEIIVLRKYTS-TECTF 56
          MK TG++R +D LGRIV+P+E+R    ID+ DPIE F+ DEE IVL+KY +  EC  
Sbjct: 1  MKSTGIVRKIDDLGRIVIPMELRRVLQIDVKDPIEIFV-DEEKIVLQKYKAHQECMI 56


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,790,679
Number of extensions: 422521
Number of successful extensions: 955
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 11
Length of query: 157
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 59
Effective length of database: 27,075,699
Effective search space: 1597466241
Effective search space used: 1597466241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)