BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0016.p
         (142 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-as...   118   2e-27
NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-as...   118   2e-27
DR1749_2 [M] COG0791 Cell wall-associated hydrolases (invasion-a...   118   3e-27
PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-ass...   116   1e-26
BH3671_2 [M] COG0791 Cell wall-associated hydrolases (invasion-a...   116   1e-26

>NMB2001 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 251

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 80/111 (72%), Gaps = 4/111 (3%)

Query: 24  IGTTYKFGGTSTS-GFDCSGFTRYVFKN-VGLTLPRTSKAQFSVGTPVSRNNLRSGDLVF 81
           +G  Y++GGTS S GFDCSGF +++FK  +G+ LPRTS  Q  +GTPV+R+ L+ GD+VF
Sbjct: 131 LGIAYRYGGTSVSTGFDCSGFMQHIFKRAMGINLPRTSAEQARMGTPVARSELQPGDMVF 190

Query: 82  FNTF-GSGVSHVGIYVGNGKFAQSSSS-RGVTITSLSQAYWANRYVGAKRV 130
           F T  GS +SHVG+Y+GN +F  +  + + + ITSLS  YW+ +Y  A+RV
Sbjct: 191 FRTLGGSRISHVGLYIGNNRFIHAPRTGKNIEITSLSHKYWSGKYAFARRV 241


>NMA0440 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 171

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 0/111 (0%), Positives = 0/111 (0%), Gaps = 4/111 (3%)

Query: 24  IGTTYKFGGTSTS-GFDCSGFTRYVFKN-VGLTLPRTSKAQFSVGTPVSRNNLRSGDLVF 81
                                                                       
Sbjct: 160                                                              219

Query: 82  FNTF-GSGVSHVGIYVGNGKFAQSSSS-RGVTITSLSQAYWANRYVGAKRV 130
                                                              
Sbjct: 220                                                     270


>DR1749_2 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 144

 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 79/118 (66%), Gaps = 2/118 (1%)

Query: 16  MDTVIAKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLR 75
           ++T  ++ +G  Y  GGT   G DCSG+T  VF+ +G+ LPRT+  Q+  G  VS  NL+
Sbjct: 26  VNTAASRYLGIRYSLGGTGAGGIDCSGYTMRVFQQMGINLPRTAAGQWGAGYAVSSRNLQ 85

Query: 76  SGDLVFFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITS--LSQAYWANRYVGAKRVM 131
           +GDLVFFNT G GVSHVG+Y+GNG  A ++S  G T+        YWA+R++GA+RV+
Sbjct: 86  AGDLVFFNTTGRGVSHVGVYLGNGMMANANSYYGRTVVEPLFGNPYWASRFMGARRVI 143


>PA1198 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 205

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 79/117 (67%), Gaps = 5/117 (4%)

Query: 22  KTIGTTYKFGGTSTSGFDCSGFTRYVFK-NVGLTLPRTSKAQFSVGTP-VSRNNLRSGDL 79
           + IGT Y+FGGT+  GFDCSGF  Y+F+   G+ LPR+++    +  P VS++ L+ GDL
Sbjct: 79  ELIGTPYRFGGTTAKGFDCSGFVGYLFREEAGIKLPRSTRELIDMDVPLVSKDELQPGDL 138

Query: 80  VFFNTFGSG-VSHVGIYVGNGKFAQSSSSR--GVTITSLSQAYWANRYVGAKRVMST 133
           +FFN  G G VSH GIY+G+G+F  S+S R  GV + SL  +YW+  Y+ AKRV+  
Sbjct: 139 LFFNNRGRGRVSHAGIYIGDGQFIHSASRRGGGVRVDSLDSSYWSLSYMEAKRVLEP 195


>BH3671_2 [M] COG0791 Cell wall-associated hydrolases (invasion-associated
           proteins)
          Length = 116

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 81/110 (73%), Gaps = 3/110 (2%)

Query: 21  AKTIGTTYKFGGTSTSGFDCSGFTRYVFKNVGLTLPRTSKAQFSVGTPVSRNNLRSGDLV 80
           ++ IGT Y +GGT+  GFDCSGF +YVF   G+++PRT    ++ GT VS+ ++  GD+V
Sbjct: 9   SELIGTPYVWGGTTPRGFDCSGFVQYVFAQQGVSIPRTVAQMWNAGTSVSQPSV--GDIV 66

Query: 81  FFNTFGSGVSHVGIYVGNGKFAQSSSSRGVTITSLSQAYWANRYVGAKRV 130
           FF+T G G SH GIY+GN +F  S SS GVTI S++ +YWA+RY+GAKR+
Sbjct: 67  FFDTTG-GPSHNGIYIGNNQFIHSGSSTGVTIASMNNSYWASRYLGAKRL 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,325,024
Number of extensions: 401337
Number of successful extensions: 819
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 68
Length of query: 142
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 46
Effective length of database: 27,306,367
Effective search space: 1256092882
Effective search space used: 1256092882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)