BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0004.p
         (164 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0041 [G] COG1501 Alpha-glucosidases, family 31 of glycosyl hy...   103   1e-22
PA4728 [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophospho...    86   3e-17
VC0593 [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophospho...    83   2e-16
aq_1620 [C] COG0045 Succinyl-CoA synthetase, beta subunit              81   8e-16
aq_1622 [C] COG0074 Succinyl-CoA synthetase, alpha subunit             81   8e-16

>STM0041 [G] COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases
          Length = 679

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 6/103 (5%), Positives = 19/103 (18%)

Query: 20  GIEVVRCSSVYETEPVGYLDQPQFLNMAAVLRTTLAPEALLHEMLDIESQLGRVRDVRYG 79
             +  R         +      +        R           + +  ++     D  + 
Sbjct: 5   QQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNEDWALTEPVAESQCHIDYEHH 64

Query: 80  PRTVDLDLLWVENQSFDTPDLTLPHPRMLERAFVLIPLNDVVP 122
             T+    +                 + L + F  +       
Sbjct: 65  QATLTNGKIIAIVNQKGQVTFYRHPHKPLLQEFWRLRGEIGED 107


>PA4728 [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
          Length = 162

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 73/122 (59%)

Query: 1   LGDREGTLKEALNRLNQHAGIEVVRCSSVYETEPVGYLDQPQFLNMAAVLRTTLAPEALL 60
           L +    ++ AL+   +     +V  S +Y ++P+G  DQP+F+N  A L T LAP  LL
Sbjct: 13  LAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLL 72

Query: 61  HEMLDIESQLGRVRDVRYGPRTVDLDLLWVENQSFDTPDLTLPHPRMLERAFVLIPLNDV 120
             +  IE + GRVRD+R+GPRT+DLD+L    Q  D P L +PH  M  RAFVL PL D+
Sbjct: 73  DALQAIELEQGRVRDLRWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADL 132

Query: 121 VP 122
            P
Sbjct: 133 AP 134


>VC0593 [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
          Length = 167

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 4/151 (2%)

Query: 1   LGDREGTLKEALNRLNQHAGIEVVRCSSVYETEPVGYLDQPQFLNMAAVLRTTLAPEALL 60
           LGD     + A+ +L       ++  SS+Y + P+G  +QP ++N  A + T L P  LL
Sbjct: 12  LGDPVAQAQLAIQQLTLLPKSRLIAASSLYSSTPMGPQNQPDYINAVAAIETELTPLELL 71

Query: 61  HEMLDIESQLGRVRDV-RYGPRTVDLDLLWVENQSFDTPDLTLPHPRMLERAFVLIPLND 119
                IE + GRVR   R+GPRT+DLD++   N+  +T  LT+PH  M  R FVL PL +
Sbjct: 72  DCTQRIELEQGRVRKSERWGPRTLDLDIVLYGNEVIETERLTIPHYGMKVREFVLYPLAE 131

Query: 120 VVPQKEESSGLRQFITAALQDIDGREGIRLW 150
           + P      G    I A LQ +    G+ +W
Sbjct: 132 IAPNLTLPDGTE--IQALLQQVP-LNGLSIW 159


>aq_1620 [C] COG0045 Succinyl-CoA synthetase, beta subunit
          Length = 346

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 8/122 (6%), Positives = 20/122 (16%), Gaps = 2/122 (1%)

Query: 1   LGDREGTLKEALNRLNQHAGIEVVRCSSVYETEPVGYLDQPQFLNMAAVLRTTLAPEALL 60
                G         N  A             + +  +D  +   +     T    E  +
Sbjct: 12  EVSTLGLGTMTFGEQNSEADAH--AQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYV 69

Query: 61  HEMLDIESQLGRVRDVRYGPRTVDLDLLWVENQSFDTPDLTLPHPRMLERAFVLIPLNDV 120
              L       ++            +   +                   +      L+  
Sbjct: 70  GNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLY 129

Query: 121 VP 122
             
Sbjct: 130 QV 131


>aq_1622 [C] COG0074 Succinyl-CoA synthetase, alpha subunit
          Length = 346

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 8/122 (6%), Positives = 20/122 (16%), Gaps = 2/122 (1%)

Query: 1   LGDREGTLKEALNRLNQHAGIEVVRCSSVYETEPVGYLDQPQFLNMAAVLRTTLAPEALL 60
                G         N  A             + +  +D  +   +     T    E  +
Sbjct: 12  EVSTLGLGTMTFGEQNSEADAH--AQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYV 69

Query: 61  HEMLDIESQLGRVRDVRYGPRTVDLDLLWVENQSFDTPDLTLPHPRMLERAFVLIPLNDV 120
              L       ++            +   +                   +      L+  
Sbjct: 70  GNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLY 129

Query: 121 VP 122
             
Sbjct: 130 QV 131


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,537,561
Number of extensions: 504801
Number of successful extensions: 642
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 10
Length of query: 164
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 66
Effective length of database: 27,075,699
Effective search space: 1786996134
Effective search space used: 1786996134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)