BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0002.p (355 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2322 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 72 2e-12 RP576 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 71 3e-12 lin1482 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 70 4e-12 RC0880 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 67 5e-11 mlr9159 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase 65 2e-10 >lin2322 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 301 Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 5/208 (2%), Positives = 32/208 (15%), Gaps = 27/208 (12%) Query: 119 KTGLGDTYESTLKQANLTEDDIRSYMLRVLTVYQ--DMLLKVKDDQVKTEFEKTKGDFTV 176 + + + + + ++ + + + Sbjct: 81 AASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ 140 Query: 177 ATLRHVLIGLTDAAGKERTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENGGEI 236 D A + + Sbjct: 141 F---LASQMNFLDI-------------VPISAETGLNVDTIAAIVRKHLPEATHHFPEDY 184 Query: 237 KDKALGGYVEEFKQAAQTLP-LNTISDPVKTTFGYHIIKVE-SRTETTFDKLTAEQKQTI 294 ++ + + L T + E + ++ Sbjct: 185 ITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLI---LVEREG 241 Query: 295 KGSLASQ----GLESFLEKDLASLDVKI 318 + + +++ + + Sbjct: 242 QKKMVIGNKGAKIKTIGIEARKDMQEMF 269 >RP576 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 282 Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 213 GADFAATAKEYSDDTGSKENGGEIKDKAL---GGYVEEFKQAAQTLPLNTISDPVKTTFG 269 G +F A+E+S D + NGG I L G V EF+Q A L +N +S PVKT+FG Sbjct: 164 GGNFTKLAEEFSLDKATASNGGIIGYIILNQPGQLVPEFEQKAFALKVNEVSTPVKTSFG 223 Query: 270 YHIIKVESRTETTFDKLTAEQKQTIKGSLASQGLESFLEKDLASLDVKINLPKSSAAAG 328 +HIIKV + E K TI LA++ L+ ++ A D+KI LPK+++ G Sbjct: 224 WHIIKVLEKKPVPIPT-KEEAKVTIDNILAAEILKQYISDLEAKADLKIMLPKANSKTG 281 >lin1482 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 301 Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 7/202 (3%), Positives = 31/202 (15%), Gaps = 23/202 (11%) Query: 123 GDTYESTLKQANLTEDDIRSYMLRVLTVYQ--DMLLKVKDDQVKTEFEKTKGDFTVATLR 180 + + + + + ++ + + + Sbjct: 85 SIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQ---F 141 Query: 181 HVLIGLTDAAGKERTXXXXXXXXXXXXXXXXGGADFAATAKEYSDDTGSKENGGEIKDKA 240 D A + + Sbjct: 142 LASQM-NFLDIVP------------ISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDR 188 Query: 241 LGGYVEEFKQAAQTLP-LNTISDPVKTTFGYHIIKVESRTET-TFDKLTAEQKQT-IKGS 297 ++ + + L T + E L + Q + Sbjct: 189 SQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIG 248 Query: 298 LASQGLESFLEKDL--ASLDVK 317 +++ + + Sbjct: 249 NKGAKIKTIGIEARKDMQEMFE 270 >RC0880 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 282 Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 213 GADFAATAKEYSDDTGSKENGGEIKDKAL---GGYVEEFKQAAQTLPLNTISDPVKTTFG 269 G +F A+E S D S NGG I L G V EF++ A L +N +S PVKT FG Sbjct: 164 GGNFTKLAEELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVNEVSTPVKTDFG 223 Query: 270 YHIIKVESRTETTFDKLTAEQKQTIKGSLASQGLESFLEKDLASLDVKINLPKSSAAAG 328 +HIIKV + E K TI LA++ L+ ++ A ++KI LPK+ + AG Sbjct: 224 WHIIKVLEKKPVPIP-TKEEAKVTIDNILAAEVLKKYIADLEAKANLKIMLPKADSKAG 281 >mlr9159 [O] COG0760 Parvulin-like peptidyl-prolyl isomerase Length = 301 Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 5/159 (3%), Positives = 21/159 (13%), Gaps = 6/159 (3%) Query: 157 KVKDDQVKTEFEKTKGDFTVATLRHVLIGLTDAAG------KERTXXXXXXXXXXXXXXX 210 V + + L+ + + Sbjct: 117 APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 176 Query: 211 XGGADFAATAKEYSDDTGSKENGGEIKDKALGGYVEEFKQAAQTLPLNTISDPVKTTFGY 270 S+ ++ + N Sbjct: 177 THHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLIL 236 Query: 271 HIIKVESRTETTFDKLTAEQKQTIKGSLASQGLESFLEK 309 + + + + + E+ + Sbjct: 237 VEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHL 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.309 0.126 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,584,950 Number of extensions: 706462 Number of successful extensions: 1157 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 1147 Number of HSP's successfully gapped: 31 Length of query: 355 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 248 Effective length of database: 26,037,693 Effective search space: 6457347864 Effective search space used: 6457347864 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 116 (49.3 bits)