BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0032.p
         (220 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1042 [S] COG4718 Phage-related protein                             142   4e-34
MTH1506 [E] COG0040 ATP phosphoribosyltransferase                     119   4e-27

>STM1042 [S] COG4718 Phage-related protein
          Length = 110

 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 0/207 (0%), Positives = 0/207 (0%), Gaps = 13/207 (6%)

Query: 6   ILKVAMPKGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFI--LAKPVDVPTY 63
           ++K    K           + + +                  A           V +   
Sbjct: 1   MMKTFHWKVDPDMGVDSEPQVSVVRFGDGY--------EQRRASGINNDLKKYSVTIRVD 52

Query: 64  VEYGVADIGIVGKDVLLEENRDVYELLDLGIARCRMSIIGLPNWQ--PGIQQRVATKYPN 121
            E G    G + +   ++            I                             
Sbjct: 53  REDGPGLEGFLSQHNGVKAFLWTPPYGYRQIKVVCRKWSV-KAGLLK              111

Query: 122 VASRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFEITS 181
                                                                       
Sbjct: 112                                                              171

Query: 182 RLVANRVSYRMKNEEIQQLCDRLQAVI 208
                                      
Sbjct: 172                             198


>MTH1506 [E] COG0040 ATP phosphoribosyltransferase
          Length = 268

 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 10/214 (4%), Positives = 35/214 (16%), Gaps = 11/214 (5%)

Query: 7   LKVAMP-KGRIYNKAAELFRQAGLPIPPDGEESRKLVISLPEAGMEFILAKPVDVPTYVE 65
                              +     +          +  +    +    A          
Sbjct: 3   RVDLSIFIPDSLTAETGDLKIKTYKVV--LIARAASIFGVKRIVIYHDDADGEARFIRDI 60

Query: 66  YGVADIGIVGKDVLLEENRDVYELLDLGIARCRM-------SIIGLPNWQPGIQQRVATK 118
               D     +  +    R++  +  L   R          +           + +  T 
Sbjct: 61  LTYMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVK-RVKKGTL 119

Query: 119 YPNVASRYFREQGQQVEVVKLNGSIELAPLIGLADRIVDMVETGQTLKDNGLVEMKSIFE 178
               A +    + +      ++  +       L +              +    +    +
Sbjct: 120 VDIGADKLALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLDTRRNLAESLK 179

Query: 179 ITSRLVANRVSYRMKNEEIQQLCDRLQAVITGPG 212
                V    S             + +       
Sbjct: 180 TVGADVVVATSRNASPITSILDEVKTRMRGAREA 213


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.139    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,132,262
Number of extensions: 653803
Number of successful extensions: 1418
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 118
Effective length of database: 26,614,363
Effective search space: 3140494834
Effective search space used: 3140494834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)