BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0030.p
         (203 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc691 [R] COG1409 Predicted phosphohydrolases                        203   1e-52
AGc699 [S] COG4782 Uncharacterized protein conserved in bacteria      203   1e-52
NMA0219 [NU] COG5008 Tfp pilus assembly protein, ATPase PilU          189   2e-48

>AGc691 [R] COG1409 Predicted phosphohydrolases
          Length = 214

 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 133/196 (67%), Gaps = 1/196 (0%)

Query: 9   AVRKAGLSRKTNETDIKLSLAVDGSGVSELETDVPFLNHMLDLFTKHGQFDLSVQARGDI 68
           A RK  + RKTNET + + + +DG+G S++ T V F +HMLD  ++H   D+ ++ +GD+
Sbjct: 18  AERKGEIIRKTNETSVSVRVDIDGTGKSKISTGVGFFDHMLDQLSRHSLIDMDIEVQGDL 77

Query: 69  DIDDHHTVEDIGICLGQAFREALGDKKGIKRYANVFIPMDEALAQVVIDISNRPHFEYRA 128
            IDDHHTVED GI +GQA  +ALGD++GI RYA++ + MDE + +  +DIS RP   +  
Sbjct: 78  HIDDHHTVEDTGIAIGQAIAKALGDRRGITRYASLDLAMDETMTKAAVDISGRPFLVWNV 137

Query: 129 TYPSQQVGSFSTELVHEFLWKFALEARITLHVIVHYGSNTHHMIEAVFKALGRALDEATL 188
            + + ++G+F TELV EF    A  A ITLH++ HYG+N HH+ E  FKA+ R L  AT 
Sbjct: 138 NFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGANNHHIAETCFKAVARVLRTATE 197

Query: 189 IDPRVKG-VPSTKGVL 203
           IDPR  G VPSTKG+L
Sbjct: 198 IDPRQAGRVPSTKGML 213


>AGc699 [S] COG4782 Uncharacterized protein conserved in bacteria
          Length = 214

 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 133/196 (67%), Gaps = 1/196 (0%)

Query: 9   AVRKAGLSRKTNETDIKLSLAVDGSGVSELETDVPFLNHMLDLFTKHGQFDLSVQARGDI 68
           A RK  + RKTNET + + + +DG+G S++ T V F +HMLD  ++H   D+ ++ +GD+
Sbjct: 18  AERKGEIIRKTNETSVSVRVDIDGTGKSKISTGVGFFDHMLDQLSRHSLIDMDIEVQGDL 77

Query: 69  DIDDHHTVEDIGICLGQAFREALGDKKGIKRYANVFIPMDEALAQVVIDISNRPHFEYRA 128
            IDDHHTVED GI +GQA  +ALGD++GI RYA++ + MDE + +  +DIS RP   +  
Sbjct: 78  HIDDHHTVEDTGIAIGQAIAKALGDRRGITRYASLDLAMDETMTKAAVDISGRPFLVWNV 137

Query: 129 TYPSQQVGSFSTELVHEFLWKFALEARITLHVIVHYGSNTHHMIEAVFKALGRALDEATL 188
            + + ++G+F TELV EF    A  A ITLH++ HYG+N HH+ E  FKA+ R L  AT 
Sbjct: 138 NFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGANNHHIAETCFKAVARVLRTATE 197

Query: 189 IDPRVKG-VPSTKGVL 203
           IDPR  G VPSTKG+L
Sbjct: 198 IDPRQAGRVPSTKGML 213


>NMA0219 [NU] COG5008 Tfp pilus assembly protein, ATPase PilU
          Length = 191

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 127/194 (65%), Gaps = 3/194 (1%)

Query: 10  VRKAGLSRKTNETDIKLSLAVDGSGVSELETDVPFLNHMLDLFTKHGQFDLSVQARGDID 69
           +R   +SRKT ETDI+L L +DG GV+++ T + F +HML  F++H +FDL V+A GD+ 
Sbjct: 1   MRTGRISRKTKETDIQLELNLDGKGVADISTGLGFFDHMLASFSRHSEFDLKVRAEGDLY 60

Query: 70  IDDHHTVEDIGICLGQAFREALGDKKGIKRYANVFIPMDEALAQVVIDISNRPHFEYRAT 129
           +D+HH VED+GI LG+A  E LGD  GI R+    IPMDEALA+V +D+  R +   +A 
Sbjct: 61  VDEHHLVEDVGIVLGRALAEVLGDMSGIARFGEARIPMDEALAEVALDVGGRNYLVLKAE 120

Query: 130 YPSQQVGSFSTELVHEFLWKFALEARITLHVIVHYGSNTHHMIEAVFKALGRALDEATLI 189
           + S QVG FST+LV  F    A  A+IT+H  V YG N HH IEA+FKA   A+  A  I
Sbjct: 121 FASPQVGQFSTQLVRHFFETLASNAKITMHASV-YGDNDHHKIEALFKAFAYAMKRAVKI 179

Query: 190 DPRVKGVPSTKGVL 203
           +   K V STKG L
Sbjct: 180 EG--KEVKSTKGTL 191


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,652,763
Number of extensions: 566992
Number of successful extensions: 2153
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2151
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 102
Effective length of database: 26,729,697
Effective search space: 2726429094
Effective search space used: 2726429094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)