BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0029.p (207 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj1315c [E] COG0118 Glutamine amidotransferase 170 2e-42 AGc649 [R] COG1611 Predicted Rossmann fold nucleotide-binding pr... 167 9e-42 AGc647 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 167 9e-42 AGc640 [J] COG0242 N-formylmethionyl-tRNA deformylase 167 9e-42 PA3152 [E] COG0118 Glutamine amidotransferase 167 1e-41 >Cj1315c [E] COG0118 Glutamine amidotransferase Length = 252 Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 11/202 (5%), Positives = 35/202 (17%), Gaps = 4/202 (1%) Query: 3 VAIVDYGMGNLHSVSKAVERLGYKSLVTGKAGEILAADSVILPGVGAFGDAMEHLRESG- 61 + + + + R +G Sbjct: 2 SDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITGI 61 Query: 62 LDAVVQEAAASGQPLLGICLGMQLLFSSSEEYGTHEGLNLLPGSVVRFAPREGYKVPHMG 121 + A A + + + N + + V + Sbjct: 62 DSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLLN 121 Query: 122 WNKLDFLQPQSPLFTGLE-AGHVYFVHSFHAIMAQQSDLLAVTDYGHPVTAIVGRENVYG 180 + +Q + + + + LA + + + G E Sbjct: 122 PQGVLAVQ-MPDNWLEPTHVLMREVAWEQN-YPDRGREPLAGVHAYYDILSEAGCEVDIW 179 Query: 181 MQFHPEKSGELGMKLLGNFLKL 202 + + + Sbjct: 180 RTTYYHQMPSHQAIIDWVTATG 201 >AGc649 [R] COG1611 Predicted Rossmann fold nucleotide-binding protein Length = 221 Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 22/220 (10%) Query: 1 MTVAIVDYGMGNLHSVSKAVERLGYKSLV------TGKAGEILAADSVILPGVGAFGD-- 52 M VAI+DYG GNL S +KA ER ++ + T K + +AD ++LPGVGA+ D Sbjct: 6 MRVAIIDYGSGNLRSATKAFERAAREAGIDATIDLTDKPDHVASADRIVLPGVGAYADCS 65 Query: 53 ----AMEHLRESGLDAVVQEAAASGQPLLGICLGMQLLFSSSEEYGTHEGLNLLPGSVVR 108 AM + E+ ++AV ++A P LGIC+GMQL+ S E GL + G VV Sbjct: 66 AGLNAMPGMHEALIEAVEKKA----HPFLGICVGMQLMSSRGLEKTVSTGLGWIEGDVVE 121 Query: 109 FAPRE-GYKVPHMGWNKLDFLQPQSPLFTGLEAG----HVYFVHSFHAIMAQQSDLLAVT 163 P + K+P +GWN L+ ++ PLF G++ G H YFVHS+H +D++A T Sbjct: 122 MTPSDPTLKIPQIGWNTLE-IRHAHPLFDGIKTGADGLHAYFVHSYHLAAKHSTDVIATT 180 Query: 164 DYGHPVTAIVGRENVYGMQFHPEKSGELGMKLLGNFLKLK 203 +YG +TA VGR+N+ G QFHPEKS LG+ L+ NFL+ K Sbjct: 181 NYGGAMTAFVGRDNMAGAQFHPEKSQTLGLALISNFLRWK 220 >AGc647 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 0/220 (0%), Positives = 0/220 (0%), Gaps = 22/220 (10%) Query: 1 MTVAIVDYGMGNLHSVSKAVERLGYKSLV------TGKAGEILAADSVILPGVGAFGD-- 52 M AIVD + + + + + ++ Sbjct: 6 MIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAE 65 Query: 53 ----AMEHLRESGLDAVVQEAAASGQPLLGICLGMQLLFSSSEEYGTHEGLNLLPGSVVR 108 A+ E + L ++ S+ + V Sbjct: 66 GPTIAVHQSDEQLALMDDWNV----RTHTASGLVERVKASTMGDREAELATLEFLKQWVP 121 Query: 109 FAPRE-GYKVPHMGWNKLDFLQPQSPLFTGLEAG----HVYFVHSFHAIMAQQSDLLAVT 163 L + + T Sbjct: 122 AGKSPICGNSIGQDRRFLF-KYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGT 180 Query: 164 DYGHPVTAIVGRENVYGMQFHPEKSGELGMKLLGNFLKLK 203 Sbjct: 181 220 >AGc640 [J] COG0242 N-formylmethionyl-tRNA deformylase Length = 221 Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 22/220 (10%) Query: 1 MTVAIVDYGMGNLHSVSKAVERLGYKSLV------TGKAGEILAADSVILPGVGAFGD-- 52 M VAI+DYG GNL S +KA ER ++ + T K + +AD ++LPGVGA+ D Sbjct: 6 MRVAIIDYGSGNLRSATKAFERAAREAGIDATIDLTDKPDHVASADRIVLPGVGAYADCS 65 Query: 53 ----AMEHLRESGLDAVVQEAAASGQPLLGICLGMQLLFSSSEEYGTHEGLNLLPGSVVR 108 AM + E+ ++AV ++A P LGIC+GMQL+ S E GL + G VV Sbjct: 66 AGLNAMPGMHEALIEAVEKKA----HPFLGICVGMQLMSSRGLEKTVSTGLGWIEGDVVE 121 Query: 109 FAPRE-GYKVPHMGWNKLDFLQPQSPLFTGLEAG----HVYFVHSFHAIMAQQSDLLAVT 163 P + K+P +GWN L+ ++ PLF G++ G H YFVHS+H +D++A T Sbjct: 122 MTPSDPTLKIPQIGWNTLE-IRHAHPLFDGIKTGADGLHAYFVHSYHLAAKHSTDVIATT 180 Query: 164 DYGHPVTAIVGRENVYGMQFHPEKSGELGMKLLGNFLKLK 203 +YG +TA VGR+N+ G QFHPEKS LG+ L+ NFL+ K Sbjct: 181 NYGGAMTAFVGRDNMAGAQFHPEKSQTLGLALISNFLRWK 220 >PA3152 [E] COG0118 Glutamine amidotransferase Length = 252 Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 12/202 (5%), Positives = 35/202 (17%), Gaps = 4/202 (1%) Query: 3 VAIVDYGMGNLHSVSKAVERLGYKSLVTGKAGEILAADSVILPGVGAFGDAMEHLRESGL 62 + + + + R +G+ Sbjct: 2 SDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITGI 61 Query: 63 -DAVVQEAAASGQPLLGICLGMQLLFSSSEEYGTHEGLNLLPGSVVRFAPREGYKVPHMG 121 + A A + + + + + + Sbjct: 62 DSSPAMIAEARSALPDCQFVEADIRNWQPVQ-ALDLIFANASLQWLPDHYELFPHLVSLL 120 Query: 122 WNKLDFLQPQSPLFTGL-EAGHVYFVHSFHAIMAQQSDLLAVTDYGHPVTAIVGRENVYG 180 + L Q P + V + + LA + + + G E Sbjct: 121 NPQGV-LAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIW 179 Query: 181 MQFHPEKSGELGMKLLGNFLKL 202 + + + Sbjct: 180 RTTYYHQMPSHQAIIDWVTATG 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,286,308 Number of extensions: 690913 Number of successful extensions: 1703 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 1684 Number of HSP's successfully gapped: 8 Length of query: 207 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 105 Effective length of database: 26,614,363 Effective search space: 2794508115 Effective search space used: 2794508115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)