BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0010.p (198 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases 323 8e-89 BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 315 2e-86 CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 308 2e-84 SA0723 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases 299 2e-81 sll0534 [OU] COG0740 Protease subunit of ATP-dependent Clp prote... 289 2e-78 >BH3564 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 194 Score = 323 bits (829), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 152/193 (78%), Positives = 174/193 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LGT ++D VANSI+AQ+LFL AEDPDKDI Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQYIKP+VSTIC+GMAASMGAFLL AGAKGKRFALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGG +GQA+DIEI RRIL++R+ LN ILAERTGQPLE+I KDTDRD FM+A A Sbjct: 121 MIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKA 180 Query: 181 AEYGIVDKVIEKT 193 EYG++DKVIE T Sbjct: 181 REYGLIDKVIETT 193 >BS_clpP [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 197 Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 147/193 (76%), Positives = 174/193 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+EQ+NRGERAYDIYSRLLKDRII LG+ ++D VANSI++Q+LFLAAEDP+K+I Sbjct: 1 MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 LY+NSPGGSITAGMAI+DTMQ+IKP VSTIC+GMAASMGAFLL AG KGKR+ALPNSE+ Sbjct: 61 SLYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQAT+IEI A+RIL LRDKLN +LAERTGQPLE IE+DTDRD F SA +A Sbjct: 121 MIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEA 180 Query: 181 AEYGIVDKVIEKT 193 EYG++DK++ T Sbjct: 181 LEYGLIDKILTHT 193 >CAC2640 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 193 Score = 308 bits (790), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 140/192 (72%), Positives = 173/192 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 +S +P V+EQ++RGER+YDIYSRLLKDR+IFLG EVND A+ ++AQ+LFL +EDPDKDI Sbjct: 1 MSLVPYVIEQTSRGERSYDIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 +LY+NSPGGSIT+GMAI+DTMQY+KPDVSTIC+GMAASMG+FLL AGA GKRFALPNSEI Sbjct: 61 YLYINSPGGSITSGMAIYDTMQYVKPDVSTICIGMAASMGSFLLTAGAPGKRFALPNSEI 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGG +GQATDI I A+RIL+++ KLN I +ERTG+P+E IEKDTDRD+F+SA +A Sbjct: 121 MIHQPLGGFKGQATDIGIHAQRILEIKKKLNSIYSERTGKPIEVIEKDTDRDHFLSAEEA 180 Query: 181 AEYGIVDKVIEK 192 EYG++D+VI K Sbjct: 181 KEYGLIDEVITK 192 >SA0723 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 195 Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 135/190 (71%), Positives = 171/190 (90%) Query: 1 VSYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDI 60 ++ IP V+E +NRGERAYDIYSRLLKDRII LG++++D VANSI++Q+LFL A+D +KDI Sbjct: 1 MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI 60 Query: 61 HLYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEI 120 +LY+NSPGGS+TAG AI+DT+Q+IKPDV TIC+GMAASMG+FLL AGAKGKRFALPN+E+ Sbjct: 61 YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV 120 Query: 121 MIHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDA 180 MIHQPLGGAQGQAT+IEI A ILK R+KLN IL+ERTGQ +E+I+KDTDRD F++A +A Sbjct: 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEA 180 Query: 181 AEYGIVDKVI 190 EYG++D+V+ Sbjct: 181 KEYGLIDEVM 190 >sll0534 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases Length = 226 Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 132/191 (69%), Positives = 167/191 (87%) Query: 2 SYIPMVVEQSNRGERAYDIYSRLLKDRIIFLGTEVNDVVANSIIAQMLFLAAEDPDKDIH 61 S +PMVVEQS GERA+DIYSRLL++RIIFLGT V+D VA+SI+AQ+LFL AEDP+KDI Sbjct: 22 SVVPMVVEQSGMGERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQ 81 Query: 62 LYVNSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAGAKGKRFALPNSEIM 121 LY+NSPGGS+ AG+AI+DTMQ I+PDV TIC G+AASMGAFLL+ G KGKR ALP+S IM Sbjct: 82 LYINSPGGSVYAGLAIYDTMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIM 141 Query: 122 IHQPLGGAQGQATDIEIRARRILKLRDKLNHILAERTGQPLERIEKDTDRDYFMSAVDAA 181 IHQPLGGAQGQA +IEI+AR IL ++D+LN +L E TGQP+E++++DT+RD+FMSA +A Sbjct: 142 IHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAK 201 Query: 182 EYGIVDKVIEK 192 EYG++D+VI + Sbjct: 202 EYGLIDQVISR 212 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,282,058 Number of extensions: 570079 Number of successful extensions: 1127 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 1103 Number of HSP's successfully gapped: 60 Length of query: 198 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 97 Effective length of database: 26,729,697 Effective search space: 2592780609 Effective search space used: 2592780609 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)