BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0005.p (285 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1089_2 [R] COG0388 Predicted amidohydrolase 289 3e-78 BS_yhcX_2 [R] COG0388 Predicted amidohydrolase 283 2e-76 AGc413 [R] COG0388 Predicted amidohydrolase 161 1e-39 AGc4139 [K] COG0640 Predicted transcriptional regulators 161 1e-39 AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport... 161 1e-39 >BH1089_2 [R] COG0388 Predicted amidohydrolase Length = 313 Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 135/278 (48%), Positives = 186/278 (66%) Query: 4 RVSAVQYHLHTISSFGEFAAECEHYIKTAGEYGAEFILFPEFLTTQLMSIGDEQGKALTI 63 R++ +QY + ISSF +FA +CE+Y A Y ++F +FPE T QL+S E+ +L I Sbjct: 30 RITTIQYEMKKISSFEDFAIQCEYYTDVAASYQSDFAVFPEIFTLQLLSFLPEKSPSLAI 89 Query: 64 EDLPQFTDRYRELFAGYAQKYAVHIIGGTHVLRRNGKLYNVAHLFYPDGRIAEQAKLHIT 123 L +FT+ Y ELF A KY ++IIGG+H + +GK+YN+A+LF DG I +Q KLHIT Sbjct: 90 RRLTEFTEDYIELFTNLAIKYNINIIGGSHFVEEDGKIYNIAYLFRRDGTIEKQYKLHIT 149 Query: 124 PAEVEGWNMGAGEGLEVFQTDKGTIAMLTCYDIEFPEIVRMARAKGADVIFCPSCTDDRH 183 P E + W + G+ + VF TD G IA+ CYDIEFPE+ R+A KGA++IF P CTDDR Sbjct: 150 PNERKFWGITGGDEVRVFDTDCGKIAIQICYDIEFPELARIAVDKGANIIFTPFCTDDRQ 209 Query: 184 GFHRVRYTSHARAVENQVYVVLTGTVGSLPTVDLMRANFGQAAVITPNDIPFPPQGLLAE 243 G+ RVRY S ARA+ENQVY VL+GTVG+LP V+ M + Q+ + +P+D F G++ E Sbjct: 210 GYLRVRYCSQARAIENQVYTVLSGTVGNLPDVENMDIQYAQSGIFSPSDFTFARDGVVGE 269 Query: 244 GEINSDMIITADLDLELLYRVRERGSVTTWRDRRTDLY 281 N + ++ D+DLE+L R R GSV RDRR D+Y Sbjct: 270 CSPNIETVVVGDVDLEILRRHRRAGSVNQLRDRRHDIY 307 >BS_yhcX_2 [R] COG0388 Predicted amidohydrolase Length = 313 Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 129/278 (46%), Positives = 185/278 (66%) Query: 4 RVSAVQYHLHTISSFGEFAAECEHYIKTAGEYGAEFILFPEFLTTQLMSIGDEQGKALTI 63 R+ +QY + I SF EFA + E+Y+ A + ++F +FPE TTQLMS +E+ +L + Sbjct: 30 RICVIQYEMKKIYSFEEFANQVEYYVDVASDARSDFAVFPEIFTTQLMSFLEERSPSLAV 89 Query: 64 EDLPQFTDRYRELFAGYAQKYAVHIIGGTHVLRRNGKLYNVAHLFYPDGRIAEQAKLHIT 123 + + ++T+ Y LF A KY V+IIGG+H + GK+YN+A+LF DG I +Q KLHIT Sbjct: 90 QRITEYTEDYISLFTDLAVKYNVNIIGGSHFVEEEGKIYNIAYLFRRDGTIEKQYKLHIT 149 Query: 124 PAEVEGWNMGAGEGLEVFQTDKGTIAMLTCYDIEFPEIVRMARAKGADVIFCPSCTDDRH 183 P E + W + AG+ + VF TD G IA+ CYDIEFPE+ R+A KGA +IF P CT+DR Sbjct: 150 PNERKWWGISAGDQVRVFDTDCGKIAIQICYDIEFPELARIAADKGAKIIFTPFCTEDRQ 209 Query: 184 GFHRVRYTSHARAVENQVYVVLTGTVGSLPTVDLMRANFGQAAVITPNDIPFPPQGLLAE 243 G+ RVRY S ARAVENQ+Y V++GTVG+LP + M + Q+ + P+D F G++ E Sbjct: 210 GYLRVRYCSQARAVENQIYTVISGTVGNLPQTENMDIQYAQSGIFAPSDFEFARDGIVGE 269 Query: 244 GEINSDMIITADLDLELLYRVRERGSVTTWRDRRTDLY 281 N +M++ D+DLE+L R R+ G+V +DRR D+Y Sbjct: 270 TNPNIEMVVIGDVDLEILRRQRQNGTVRQLKDRRRDIY 307 >AGc413 [R] COG0388 Predicted amidohydrolase Length = 289 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 8/280 (2%) Query: 4 RVSAVQYHLHTISSFGEFAAECEHYIKTAGEYGAEFILFPEFLTTQLMSIGDEQGKA--- 60 R++A QY + I ++ +AA ++ A E GAE +L PE+ L ++ Sbjct: 3 RLAASQYAIELIETWEAYAAHLSAIVREAKEKGAELLLLPEYSAMALTGQLPPDARSDLH 62 Query: 61 LTIEDLPQFTDRYRELFAGYAQKYAVHIIGGTHVLRR-NGKLYNVAHLFYPDGRIAEQAK 119 +IE++ + EL A+++ + G+ ++ +G+ N A LF PDG I Q K Sbjct: 63 RSIEEIQPLIPSWVELCEELARQHQILFQPGSAPVKDPDGRFRNRAWLFGPDGLIGYQDK 122 Query: 120 LHITPAEVEGWNMGAG-EGLEVFQTDKGTIAMLTCYDIEFPEIVRMARAKGADVIFCPSC 178 +T E E WN+ AG EGL+ F+T G + +L CYD EFP + R G +++ PSC Sbjct: 123 QIMTRFEREQWNIHAGVEGLKAFETSIGRLGILICYDNEFPMLGRKLAELGVELVLAPSC 182 Query: 179 TDDRHGFHRVRYTSHARAVENQVYVVLTGTVGSLPTVDLMRANFGQAAVITPNDIPFPPQ 238 TD G +RVR + ARA+ENQ V+ + T G P + N G+AA+ P+D P Sbjct: 183 TDTLAGAYRVRIGAQARALENQYAVLSSPTAGEAPWSPAVDENRGRAALYVPSDYGMPAS 242 Query: 239 GLLAEGE---INSDMIITADLDLELLYRVRERGSVTTWRD 275 G+LAE E + +++ AD+DL + R+R G V T RD Sbjct: 243 GILAESESDAVTESLMLIADIDLATVARLRTEGQVATRRD 282 >AGc4139 [K] COG0640 Predicted transcriptional regulators Length = 289 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 8/280 (2%) Query: 4 RVSAVQYHLHTISSFGEFAAECEHYIKTAGEYGAEFILFPEFLTTQLMSIGDEQGKA--- 60 R++A QY + I ++ +AA ++ A E GAE +L PE+ L ++ Sbjct: 3 RLAASQYAIELIETWEAYAAHLSAIVREAKEKGAELLLLPEYSAMALTGQLPPDARSDLH 62 Query: 61 LTIEDLPQFTDRYRELFAGYAQKYAVHIIGGTHVLRR-NGKLYNVAHLFYPDGRIAEQAK 119 +IE++ + EL A+++ + G+ ++ +G+ N A LF PDG I Q K Sbjct: 63 RSIEEIQPLIPSWVELCEELARQHQILFQPGSAPVKDPDGRFRNRAWLFGPDGLIGYQDK 122 Query: 120 LHITPAEVEGWNMGAG-EGLEVFQTDKGTIAMLTCYDIEFPEIVRMARAKGADVIFCPSC 178 +T E E WN+ AG EGL+ F+T G + +L CYD EFP + R G +++ PSC Sbjct: 123 QIMTRFEREQWNIHAGVEGLKAFETSIGRLGILICYDNEFPMLGRKLAELGVELVLAPSC 182 Query: 179 TDDRHGFHRVRYTSHARAVENQVYVVLTGTVGSLPTVDLMRANFGQAAVITPNDIPFPPQ 238 TD G +RVR + ARA+ENQ V+ + T G P + N G+AA+ P+D P Sbjct: 183 TDTLAGAYRVRIGAQARALENQYAVLSSPTAGEAPWSPAVDENRGRAALYVPSDYGMPAS 242 Query: 239 GLLAEGE---INSDMIITADLDLELLYRVRERGSVTTWRD 275 G+LAE E + +++ AD+DL + R+R G V T RD Sbjct: 243 GILAESESDAVTESLMLIADIDLATVARLRTEGQVATRRD 282 >AGc4134 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Length = 289 Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 8/280 (2%) Query: 4 RVSAVQYHLHTISSFGEFAAECEHYIKTAGEYGAEFILFPEFLTTQLMSIGDEQGKA--- 60 R++A QY + I ++ +AA ++ A E GAE +L PE+ L ++ Sbjct: 3 RLAASQYAIELIETWEAYAAHLSAIVREAKEKGAELLLLPEYSAMALTGQLPPDARSDLH 62 Query: 61 LTIEDLPQFTDRYRELFAGYAQKYAVHIIGGTHVLRR-NGKLYNVAHLFYPDGRIAEQAK 119 +IE++ + EL A+++ + G+ ++ +G+ N A LF PDG I Q K Sbjct: 63 RSIEEIQPLIPSWVELCEELARQHQILFQPGSAPVKDPDGRFRNRAWLFGPDGLIGYQDK 122 Query: 120 LHITPAEVEGWNMGAG-EGLEVFQTDKGTIAMLTCYDIEFPEIVRMARAKGADVIFCPSC 178 +T E E WN+ AG EGL+ F+T G + +L CYD EFP + R G +++ PSC Sbjct: 123 QIMTRFEREQWNIHAGVEGLKAFETSIGRLGILICYDNEFPMLGRKLAELGVELVLAPSC 182 Query: 179 TDDRHGFHRVRYTSHARAVENQVYVVLTGTVGSLPTVDLMRANFGQAAVITPNDIPFPPQ 238 TD G +RVR + ARA+ENQ V+ + T G P + N G+AA+ P+D P Sbjct: 183 TDTLAGAYRVRIGAQARALENQYAVLSSPTAGEAPWSPAVDENRGRAALYVPSDYGMPAS 242 Query: 239 GLLAEGE---INSDMIITADLDLELLYRVRERGSVTTWRD 275 G+LAE E + +++ AD+DL + R+R G V T RD Sbjct: 243 GILAESESDAVTESLMLIADIDLATVARLRTEGQVATRRD 282 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,472,334 Number of extensions: 934760 Number of successful extensions: 3637 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 3606 Number of HSP's successfully gapped: 47 Length of query: 285 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 180 Effective length of database: 26,268,361 Effective search space: 4728304980 Effective search space used: 4728304980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 115 (48.9 bits)