BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0009.p (220 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMA1977 [C] COG2010 Cytochrome c, mono- and diheme variants 82 7e-16 PAB1788 [H] COG0746 Molybdopterin-guanine dinucleotide biosynthe... 63 4e-10 MTH1438 [K] COG0640 Predicted transcriptional regulators 61 2e-09 PH0980 [H] COG0746 Molybdopterin-guanine dinucleotide biosynthes... 55 8e-08 >NMA1977 [C] COG2010 Cytochrome c, mono- and diheme variants Length = 225 Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 27/216 (12%) Query: 5 SGILLSGGYSRRMGR-DKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLGL 63 S I+L+GG RRMG +KALL G+ ++ RL + L +V +++ + ++E L Sbjct: 16 SAIVLAGGRGRRMGMVEKALLEFEGKTILERLLENLFRVVDEVILSVRDIPQKEKLLPVL 75 Query: 64 TQVPDL--------YPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAE 115 + PD GPL G+ A LL+S +E+S V A D+PF ++E + Sbjct: 76 EKFPDREIRFCFDSREDAGPLEGIRAGLLESRSEYSFVCAGDMPFVNSEIV--------- 126 Query: 116 PGRDLIRNYSGGSLQIDAAVPESITGRV-QPLLGLYHKRVLPVLEEALHGRRFRVMECLD 174 DL+ + G DAA+P R+ +PL +Y +++L +E+ G R V+ + Sbjct: 127 ---DLLFEKANGH---DAALPRWEEDRMYEPLHAVYSRKMLLEIEKTFEGERNSVLTPVF 180 Query: 175 AL-EVLYIPEAGFTG-GPEPSPLYNMNTPEDYAAAL 208 A+ +V+++ + G PE N+NT ED + + Sbjct: 181 AMKDVVFVEVSEIRGIDPELRTFANINTVEDIESMI 216 >PAB1788 [H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A Length = 191 Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 6 GILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAA--GPVIACGEQEREEYRFLGL 63 G +L+GG SRR G DK L + G+P++ + L ++ +I Q RE G Sbjct: 3 GAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEFGY 62 Query: 64 TQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRN 123 V D GP++G+++AL + V D+P EF+ Y++ G+ Sbjct: 63 EVVVDDLT-IGPISGVYSALSLGD---AFVVGGDMPSLIPEFIDYIIKQFNNSGK----- 113 Query: 124 YSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECL-DALEVLYIP 182 A VP G ++PL Y K +LEE + +++ + + A V YI Sbjct: 114 --------IACVPRWSNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIK 165 Query: 183 EAGFTGGPEPSPLYNMNTPED 203 G S +N+N ED Sbjct: 166 IEDLPLGWRES-FFNVNKKED 185 >MTH1438 [K] COG0640 Predicted transcriptional regulators Length = 268 Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 13/203 (6%), Positives = 29/203 (14%), Gaps = 24/203 (11%) Query: 8 LLSGGYSRRMGRDKALLGLGGRPVI----ARLADELSKVAAGPVIACGEQEREEYRFLGL 63 R + + AR ++ + + L Sbjct: 25 TYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYM---DTPQYLRRKVFPIMREL 81 Query: 64 TQV---PDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDL 120 V P L P + V L A+ + Sbjct: 82 KHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIGADKLALCREKLTVNRI-- 139 Query: 121 IRNYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLY 180 V + + + + + + V Sbjct: 140 ---------MSFRVVRLGKEI-LIEPDEPEDRYWGYEVLDTRRNLAESLKTVGADVVVAT 189 Query: 181 IPEAGFTGGPEPSPLYNMNTPED 203 + Sbjct: 190 S--RNASPITSILDEVKTRMRGA 210 >PH0980 [H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A Length = 211 Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 14/199 (7%), Positives = 34/199 (17%), Gaps = 21/199 (10%) Query: 8 LLSGGYSRRMGRDKALLGLGGRPVIARLADELSK--VAAGPVIACGEQEREEYRFLGLTQ 65 L R P +A LS A + + + Sbjct: 7 LEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLE 66 Query: 66 VPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRNYS 125 + + + ++ ++ C + +A Sbjct: 67 LGVEGV-KTYIKTIGLYNSKAEN---IIKTCRILLEQHNGEVPEDRAA------------ 110 Query: 126 GGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDAL-EVLYIPEA 184 +L + + + ++L + A Sbjct: 111 LEALPG-VGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPA 169 Query: 185 GFTGGPEPSPLYNMNTPED 203 F L Sbjct: 170 EFKVDCHHW-LILHGRYTC 187 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,722,485 Number of extensions: 702593 Number of successful extensions: 1243 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 1239 Number of HSP's successfully gapped: 4 Length of query: 220 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 118 Effective length of database: 26,614,363 Effective search space: 3140494834 Effective search space used: 3140494834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)