BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0008.p (600 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP0662 [T] COG2972 Predicted signal transduction protein with a ... 160 8e-39 BS_yesM [T] COG2972 Predicted signal transduction protein with a... 132 2e-30 BH2727 [T] COG2972 Predicted signal transduction protein with a ... 126 9e-29 BH1909 [T] COG2972 Predicted signal transduction protein with a ... 125 2e-28 BH2110 [T] COG2972 Predicted signal transduction protein with a ... 124 4e-28 >SP0662 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 563 Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 136/234 (58%), Gaps = 8/234 (3%) Query: 354 EMGVLARGLSGLLASVVQLLDKVRSEQEKKRQIELQAMQAQIQPHFLYNTLSSIKHLIDM 413 E+ + R + +L + QL+ +RS++E RQ +LQA+ +QI PHFLYNTL +I + + Sbjct: 332 ELREVTRQFNAMLDQIDQLMVAIRSQEETTRQYQLQALSSQINPHFLYNTLDTIIWMAEF 391 Query: 414 NERQRASTMVSALTSYFRISISKGREIIPVREEMEHVRSYLMILNIRYSQEFDYEINVAD 473 ++ QR + +L +YFR+++++G+++I + +E+ HVR YL I RY + +YEIN Sbjct: 392 HDSQRVVQVTKSLATYFRLALNQGKDLICLSDEINHVRQYLFIQKQRYGDKLEYEINENV 451 Query: 474 EXXXXXXXXXXXQPIVENAIYHGIKNKHGQGHLSVTGYREGDNAVFEVYDNGHGISEAKL 533 QP+VENA+YHGIK K GQGH+ ++ ++ V + D+G G +A Sbjct: 452 AFDNLVLPKLVLQPLVENALYHGIKEKEGQGHIKLSVQKQDSGLVIRIEDDGVGFQDAG- 510 Query: 534 SQLRASLQSDTAAYEAITYGLWNAHMRIVLHFGSSYGLQLDSEEGVYTRVKVYL 587 S + + GL N R+ LHFG++Y +++DS T+V++Y+ Sbjct: 511 -------DSSQSQLKRGGVGLQNVDQRLKLHFGANYHMKIDSRPQKGTKVEIYI 557 >BS_yesM [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 577 Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 156/335 (46%), Gaps = 15/335 (4%) Query: 263 KEGRKMAIAYNTLPLNHWVLAAVVPEKDILEGANRIKYITLVIMVFXXXXXXXXXXXXXR 322 K G++ I+Y +W V+P + + +K + + Sbjct: 253 KNGKRYFISYLQSSYQNWSYYNVIPFDQMFAKISFMKTVIGTCFLLFFCVVLLFGRKIAN 312 Query: 323 NLSNPLRYLSKQVKRFERG--DFTVSFALDQH--NEMGVLARGLSGLLASVVQLLDKVRS 378 +++ P+ L +K + + VS +L +H +E G+L R + ++ + +L+++ Sbjct: 313 SITEPIEQLVTAMKSVQHSGIEAGVSLSLPEHTQDEAGMLNRHFTVMMKRINELMEENVE 372 Query: 379 EQEKKRQIELQAMQAQIQPHFLYNTLSSIKHLIDMNERQRASTMVSALTSYFRISISKGR 438 +Q ++ EL+A+QAQI PHFLYNTL SI L N++++ S MV +L R SI + Sbjct: 373 KQLIIKETELKALQAQINPHFLYNTLESINWLAKANQQKQISKMVESLGFLLRNSIHMKK 432 Query: 439 EIIPVREEMEHVRSYLMILNIRYSQEFDYEINVADEXXXXXXXXXXXQPIVENAIYHGIK 498 +I+ ++EE + VR Y+ I R+ + + +++ DE QP+ ENAI + ++ Sbjct: 433 DIVTIQEEADIVRHYMTIQRFRFEERLKFTLDIDDEVKHCLIPKLTLQPLAENAIQYALE 492 Query: 499 NKHGQGHLSVTGYREGDNAVFEVYDNGHGISEAKLSQLRASLQSDTAAYEAITYGLWNAH 558 + + + V DNG G+ L ++ I GLWN Sbjct: 493 PFTRPCAIRIQAKKAKGCVCITVEDNGPGMDGRIL---------ESTGGRGI--GLWNIR 541 Query: 559 MRIVLHFGSSYGLQLDSEEGVYTRVKVYLPYANEA 593 RI L FG YGL++ SE TR+ + +P NE Sbjct: 542 ERISLTFGEPYGLRIHSEHEKGTRIVITIPCRNEV 576 >BH2727 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 139/279 (49%), Gaps = 5/279 (1%) Query: 322 RNLSNPLRYLSKQVKRFERGDFTVSFALDQHNEMGVLARGLSGLLASVVQLLDKVRSEQE 381 R ++ L + +Q+ + F E +A + +L + + +D V ++ Sbjct: 322 RRMTKSLTNVVEQISNMAKYHFKRPLVASGGYETEQIANAFNDMLRELQEYVDLVVETEQ 381 Query: 382 KKRQIELQAMQAQIQPHFLYNTLSSIKHLIDMNERQRASTMVSALTSYFRISISKGREII 441 K+R+ EL+A+Q QI PHFLYNTL+S+K ++ ++++A+ + AL + + ++ E I Sbjct: 382 KQRKAELKALQHQINPHFLYNTLTSVKFMVQQGDKEKAAETILALITLLQNALGHINETI 441 Query: 442 PVREEMEHVRSYLMILNIRYSQEFDYEINVADEXXXXXXXXXXXQPIVENAIYHGIKNKH 501 V +E+ ++ Y++I RY + V+ E QP +ENA +H NK Sbjct: 442 TVEQELTIIKKYVLINQARYGERIKVHYFVSPECLPYQMPKLVLQPFIENAFFHAF-NKK 500 Query: 502 GQGHLSVTGYREGDNAVFEVYDNGHGISEAKLSQLRASLQSDTAAYEAITYGLWNAHMRI 561 +G + V + + +FE+ DNG G+ K+S L + + I G+ N H RI Sbjct: 501 KEGFIQVMAAVKDEKLLFEIVDNGDGMDLEKVS-LSSRYHGKRQLFHGI--GVRNVHERI 557 Query: 562 VLHFGSSYGLQLDSEEGVYTRVKVYLP-YANEAKGESTD 599 L +G YG+++ S G T V V LP NE +ST+ Sbjct: 558 QLLYGKDYGVEMTSNIGNGTVVHVILPLLTNELSKKSTN 596 >BH1909 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 597 Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/330 (26%), Positives = 157/330 (47%), Gaps = 10/330 (3%) Query: 264 EGRKMAIAYNTLPLNHWVLA--AVVPEKDILEGANRIKYITLVIMVFXXXXXXXXXXXXX 321 E ++ + Y TL ++ L ++V ++ I++ A R+ + + + Sbjct: 257 EPSQIIVDYLTLQMSQSELKIISIVTKEHIMKDAKRLSIMGATVTMGGMAVAVLLIVHFS 316 Query: 322 RNLSNPLRYLSKQVKRFERGDFTVSFALDQHNEMGVLARGLSGLLASVVQLLDKVRSEQE 381 +S L +LS+++ + GD +D +E+G L+ + ++A++ L+ +V Sbjct: 317 WLISKRLSHLSERINQVASGDLKTKIVVDGKDEIGQLSVQFNQMVANLRSLIHQVHETNR 376 Query: 382 KKR-------QIELQAMQAQIQPHFLYNTLSSIKHLIDMNERQRASTMVSALTSYFRISI 434 +KR +I+L+ + +QI PHFL+NTL SI+ M + +V L R S+ Sbjct: 377 QKRLLEKSQNEIKLKMLASQINPHFLFNTLESIRMKSHMKGETEIAKVVKQLGKLMRKSL 436 Query: 435 SKGREIIPVREEMEHVRSYLMILNIRYSQEFDYEINVADEXXXXXXXXXXXQPIVENAIY 494 IP+R E++ VR YL I RY YE+ + + QP+VENA+ Sbjct: 437 EVTGHHIPLRNELDMVRCYLEIQTFRYGDRLHYELYIDPQSEMVEILPLIIQPLVENAVI 496 Query: 495 HGIKNKHGQGHLSVTGYREGDNAVFEVYDNGHGISEAKLSQLRASLQSDTAAYEAITYGL 554 HG++ G ++++ G++ V D+G G+ E KL ++ L + GL Sbjct: 497 HGLERTEDGGTVTISTIVNGNDLTVIVNDDGCGMDEEKLEAIQNMLHHPQEV-DGNKIGL 555 Query: 555 WNAHMRIVLHFGSSYGLQLDSEEGVYTRVK 584 N H R+ L +G + GL ++S +G T V+ Sbjct: 556 LNVHKRLQLTYGKTSGLIIESAKGKGTCVR 585 >BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain Length = 585 Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/320 (24%), Positives = 164/320 (51%), Gaps = 11/320 (3%) Query: 277 LNHWVLAAVVPEKDILEGANRIKYITLVIMVFXXXXXXXXXXXXXRNLSNPLRYLSKQVK 336 L W +A + E +ILE + + +++ +++ + L + K +K Sbjct: 261 LEGWRVAGTISENEILEELYKSREFIVILASINLLFPTLLIVLISKSIHSRLLRVLKHMK 320 Query: 337 RFERGDF-TVSFALDQHNEMGVLARGLSGLLASVVQLLDKV-------RSEQEKKRQIEL 388 R ++ F ++F D+ +E+G L + + ++ +L+++V + Q +++Q +L Sbjct: 321 RMKKQKFDIINFPGDK-DEIGELTNEFNKMSQTINRLINEVYASNIEKKDLQLREKQAQL 379 Query: 389 QAMQAQIQPHFLYNTLSSIKHLIDMNERQRASTMVSALTSYFRISISKGREIIPVREEME 448 A+Q+QI PHFL+N L +I+ + + + ++ + FR S++ G++ + VR+E+ Sbjct: 380 SALQSQINPHFLFNALETIRMRSMIKGEKETAKIIQNMAKIFRNSLTWGKDWVTVRDELC 439 Query: 449 HVRSYLMILNIRYSQEFDYEINVADEXXXXXXXXXXXQPIVENAIYHGIKNKHGQGHLSV 508 + +L I R+ + +YE+++ +E P VENA HGI++ +G + + Sbjct: 440 LIICFLEIQKYRFGDKMEYELDIDEEAYDYIIPNMVFLPFVENASIHGIESVKEKGIIQI 499 Query: 509 TGYREGDNAVFEVYDNGHGISEAKLSQLRASLQSDTAAYEAITYGLWNAHMRIVLHFGSS 568 + V+E+ DNG G+ E KL+ L +L+++ E + G+ N + R+ LH+ + Sbjct: 500 RVEKNDGEIVYEISDNGAGMDEEKLASLIETLKNEENMGENV--GIKNVYYRLKLHYKNH 557 Query: 569 YGLQLDSEEGVYTRVKVYLP 588 + ++S G T V++ LP Sbjct: 558 FDFSINSRPGQGTTVQIKLP 577 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,326,289 Number of extensions: 1479016 Number of successful extensions: 7277 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 7240 Number of HSP's successfully gapped: 29 Length of query: 600 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 488 Effective length of database: 25,461,023 Effective search space: 12424979224 Effective search space used: 12424979224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 119 (50.4 bits)