BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0005.p (279 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll0851 [G] COG0395 ABC-type sugar transport system, permease co... 174 1e-43 BMEI1714 [G] COG0395 ABC-type sugar transport system, permease c... 154 2e-37 YPO0854 [G] COG3833 ABC-type maltose transport systems, permease... 142 6e-34 BMEII0541 [G] COG0395 ABC-type sugar transport system, permease ... 139 4e-33 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 139 4e-33 >mll0851 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/265 (35%), Positives = 141/265 (53%), Gaps = 1/265 (0%) Query: 16 YIPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISVWNENNFSQYFL 75 Y +A ++ L P W + S+ E + S + + P T +N+++V +F +YFL Sbjct: 18 YAAIAAYVVFALFPIYWTLKISVTPERLLYSEGVTFWPSRMTLQNFVTVLEATDFPRYFL 77 Query: 76 NXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVILFVIPLFLIFKN 135 N + GYAMSRF F+GK+A L+LL TQ P+++ + P++ + Sbjct: 78 NSVIVSVSTAALVTVTATLAGYAMSRFTFRGKAALALMLLLTQTFPLVMVIPPIYRVMGQ 137 Query: 136 LGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXXXXXXXXXXPIV 195 +GLIN+ L++ Y F T LMQ F PK+++EA M+D P+ Sbjct: 138 IGLINSLTGLIIIYTAFNTAFATFLMQSFFDGIPKDLEEAAMIDGCTRAQAMRKVIVPLT 197 Query: 196 LPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGEFSVQYASLAAGSIIGL 255 LPG+ AT F F W+E L A I++ D+ T +GL IG+F+V + + A SI+ L Sbjct: 198 LPGMGATLGFVFTAAWSELLFALMLISSDDQKTFAVGLLTFIGKFAVDWGQMMAASILAL 257 Query: 256 IPPVLLFMYIQRYLVEGL-GGAVKG 279 IP + F ++QRYLV GL GAVKG Sbjct: 258 IPVCIFFAFLQRYLVTGLTAGAVKG 282 >BMEI1714 [G] COG0395 ABC-type sugar transport system, permease component Length = 294 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 149/282 (52%), Gaps = 7/282 (2%) Query: 4 KTARRIGSKLLFYIPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYIS 63 + RRI +++ + + L L ++++ +P W + +SL+ +IM+ ++PQ + + Y + Sbjct: 14 RMRRRI-ARVFYLVGLFLAMLVICLPGFWIVLSSLRPPVEIMAKPPVWIPQDISLDAYRT 72 Query: 64 VWNENNFS-----QYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQ 118 +++ YF N GYA +RF+F+GKSA L + T+ Sbjct: 73 MFSGAGAGGVPVWDYFRNSIIVSVTSTVVSLIIGMSGGYAFARFRFRGKSATFLGFMLTR 132 Query: 119 MMPVILFVIPLFLIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMV 178 +P I +PLF+++ +G+I+T + L+L Y+ L +PF T L+ GF PK++ EA + Sbjct: 133 SVPGIALSLPLFMVYSRIGIIDTHFGLILTYVALNIPFTTWLIDGFFRQVPKDLAEAAQI 192 Query: 179 DXXXXXXXXXXXXXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIG 238 D P+ PGI + FAF+ WNE+ +A + + T+P+GL Sbjct: 193 DGCTRWQAFWQVEFPLAGPGIASAGIFAFLTCWNEYALASQLTRSVNSKTLPVGLLDYTA 252 Query: 239 EFSVQYASLAAGSIIGLIPPVLLFMYIQRYLVEGLG-GAVKG 279 EF++ + + A +++ ++P + L IQ++LV GL GAVKG Sbjct: 253 EFTIDWRGMCALAVVMIVPALALTFVIQKHLVSGLTFGAVKG 294 >YPO0854 [G] COG3833 ABC-type maltose transport systems, permease component Length = 283 Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Query: 29 PFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISVWN-ENNFSQYFLNXXXXXXXXXXX 87 P +W + SL ++S I +P+ +F++Y ++N E N+ ++ N Sbjct: 32 PLIWTVGASLNAGNSLLSTSI--IPENLSFQHYADLFNGEVNYMTWYWNSMKISFLTMVL 89 Query: 88 XXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVILFVIPLFLIFKNLGLINTPYSLVL 147 YA SRF+FKG+ +++ L QM+P +I +F++ + LGLIN+ +LVL Sbjct: 90 TLISVSFTAYAFSRFRFKGRQNGLMLFLLLQMIPQFSALIAIFVLSQLLGLINSHMALVL 149 Query: 148 FYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXXXXXXXXXXPIVLPGIVATSAFAF 207 Y+ +P NT LM+G++ + PK++DE+ +D P+ P + + F+F Sbjct: 150 IYVAGMIPMNTYLMKGYLDAIPKDLDESARMDGASNFRIFIEIIMPLSKPIVAVVALFSF 209 Query: 208 IGVWNEFLVAFSFITTPDRFTIPIGLKFMIGE-FSVQYASLAAGSIIGLIPPVLLFMYIQ 266 G +F+++ + + TPD++T+PIGL ++ + Y + AAG+++ +P +L++ +Q Sbjct: 210 TGPLGDFILSSTILRTPDKYTLPIGLYNLVAQKMGASYTTYAAGAVLIAVPVAILYLALQ 269 Query: 267 RYLVEGL-GGAVKG 279 +Y V GL G+ KG Sbjct: 270 KYFVSGLTSGSTKG 283 >BMEII0541 [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 142/276 (51%), Gaps = 7/276 (2%) Query: 8 RIGSKLLFYIPLALT---LILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISV 64 R ++++ +P A+ ++L L PF T++K +++SP ++ P F ++N+ + Sbjct: 22 RSVARVIIMLPWAVLSPLIVLTLFPFAVMFLTAVKPAQEVLSP--NWWPSTFRWQNFSEM 79 Query: 65 WNENNFSQYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVIL 124 W NF LN YAMSRF+F AF LL +QM+ I+ Sbjct: 80 WVATNFGNALLNSIYVSVIASVGAIIISIPAAYAMSRFRFAAHGAFRQFLLVSQMISPIV 139 Query: 125 FVIPLFLIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXX 184 V+ LF + GLI + ++ Y+ + F ++Q + + P++++EA ++ Sbjct: 140 LVLGLFRLLAAYGLIESVSAVGAVYMAFNIAFTVWMLQSYFDTIPRDLEEAAWMEGAGRG 199 Query: 185 XXXXXXXXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGL-KFMIGEFSVQ 243 P+ LP I T+ F FI WNEF+VA + + + +T+PI + + G ++V+ Sbjct: 200 KTLVKVFLPLCLPAIAVTAIFTFINAWNEFVVALTMLRRQESYTLPIQVFSLVAGRYTVE 259 Query: 244 YASLAAGSIIGLIPPVLLFMYIQRYLVEGLG-GAVK 278 + + A + + +P +LF+++QRYL++GL GAVK Sbjct: 260 WHYVMAATFLATLPVAILFIWLQRYLIKGLALGAVK 295 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 138/275 (50%), Gaps = 6/275 (2%) Query: 4 KTARRIGSKLLFY-IPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYI 62 KT R + +++Y +A I+V P LW +++SLK ++I S +P F + NY Sbjct: 2 KTKRTWYADVIYYGFVIAFGFIMVY-PILWMVASSLKPASEIFSQASSLIPSEFVWSNYP 60 Query: 63 SVW---NENNFSQYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQM 119 W F YF N + Y +R +FK K L+AT M Sbjct: 61 DGWAGFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVM 120 Query: 120 MPVILFVIPLFLIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVD 179 +PV + +IP +++F NLG +NT Y L++ + PF L+ FI P+E+DEA ++D Sbjct: 121 LPVQITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIID 180 Query: 180 XXXXXXXXXXXXXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLK-FMIG 238 P++ P +V + FAF+ W++FL ++ D T+ +GL+ FM Sbjct: 181 GCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDA 240 Query: 239 EFSVQYASLAAGSIIGLIPPVLLFMYIQRYLVEGL 273 E + +L A S + L+P ++F++ QRYLVEG+ Sbjct: 241 ESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVEGI 275 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,321,338 Number of extensions: 605925 Number of successful extensions: 2190 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 1946 Number of HSP's successfully gapped: 160 Length of query: 279 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 174 Effective length of database: 26,268,361 Effective search space: 4570694814 Effective search space used: 4570694814 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)