BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0001.p (410 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VC0302 [GEPR] COG0477 Permeases of the major facilitator superfa... 63 7e-10 mll0804 [GEPR] COG0477 Permeases of the major facilitator superf... 60 6e-09 TM1032 [GEPR] COG0477 Permeases of the major facilitator superfa... 51 4e-06 STM1032 [R] COG5511 Bacteriophage capsid protein 51 4e-06 >VC0302 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 396 Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 151/363 (41%), Gaps = 42/363 (11%) Query: 19 FFLYGTVVLFSSFFPLYLQEVGMNKLEIGSLMSVGALVSIIANPFWGIWTDRYQNIRRIV 78 FF YG ++ F+ L+ ++ G++ +IG L+ +G +AN + T R + +++ Sbjct: 18 FFAYG---VYLPFWSLWFEDQGVSATDIGVLVGIGFATRCVANL---VLTPRLHRVEQLM 71 Query: 79 ----LLMLTGTLVLSQVVFQANTYEMIYVSILFFYFFQGPLFAESNTMILSYIDGTRHRF 134 L L + F ++ ++ ++ + F GP+ S+ M Y + Sbjct: 72 PALRWLSFAAMLFVGFHFFTGGSFWLMALATVLFNLCCGPVVPISDAMANYYAKLKMLDY 131 Query: 135 SSFRLWGSLGW-AFTAILAGPVIEWAGVSVLSYLFAALLCAAMISLIALPRLDHSIGIAP 193 RLWGS+ + A + ++ V +W + +L + AL+ A+ L++L + I P Sbjct: 132 GRTRLWGSIAFIAGSTVVGFLVAKWGSLMIL---YTALVGVAVSWLLSLRQ------ITP 182 Query: 194 LPFKGFRQIFYHPFF---------LSFIFFGILVSIPNTMNNTFVSLYITELGGSKTMIG 244 +P P + F+ L+ + +F S+Y + G S+ +IG Sbjct: 183 MPVTEHEAHAVRPKLKELLTEWPVVKFLLLVALIQGSHAAYYSFGSIYWKQAGHSEDIIG 242 Query: 245 LAVFLSSILEVAVLVLCDRYLKRSIPVLLGW----LALVSALFVL-RWWLMADATTPLQV 299 L + EV V R+ GW L V++L V+ RW L A TT L + Sbjct: 243 YLWSLGVVAEVLVFAFSKRWFA-------GWSLRTLFFVASLGVIARWGLTASTTTILAL 295 Query: 300 AFIQILHCVTFGGFFYVGTRLTMLLVPKPYRSSGQALYTLTWXXXXXXXXXXXXXWLYQY 359 IQ+LH VTF ++ + P+ + QALY W Y++ Sbjct: 296 VAIQLLHGVTF-AIAHIAAIQYIQHAPQNKMVALQALYNAIPLGAVIAAVTTLSGWGYEH 354 Query: 360 LGA 362 GA Sbjct: 355 WGA 357 >mll0804 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 297 Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 12/236 (5%), Positives = 47/236 (19%), Gaps = 3/236 (1%) Query: 31 FFPLYLQEVGMNKLEIGSLMSVGALVSIIANPFWGIWTDRYQNIRRIVLLMLTGTLVLSQ 90 + + + S S ++++ + + +++ + + Sbjct: 38 ISVVSEPGFNIRVRKNESNNSHEIVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFD 97 Query: 91 VVFQANTYEMIYVSILFFYFFQGPLFAESNTMILSYIDGTRHRFSSFRLWGSLGWAFTAI 150 + + + + Q + S A I Sbjct: 98 LTGKNRLKKSDELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWI 157 Query: 151 LAGPVIEWAGVSVLSYLFAALLCAAMISLIALPRLDHSIGIAPLPFKGFRQI---FYHPF 207 L + L + A + ++ + K Sbjct: 158 LHHEISHVVLQHPLVTTAFSTQEEREADSHATKWILGNLYESAPELKKRALGIATAVLCI 217 Query: 208 FLSFIFFGILVSIPNTMNNTFVSLYITELGGSKTMIGLAVFLSSILEVAVLVLCDR 263 + + + + I+ + A+ + + + Sbjct: 218 QSLEVENYFCLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINV 273 >TM1032 [GEPR] COG0477 Permeases of the major facilitator superfamily Length = 381 Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 72/310 (23%), Positives = 140/310 (45%), Gaps = 34/310 (10%) Query: 18 NFFLYGTVVLFSSFFPLYLQEVGMNKLEIGSLMSVGALVSIIANPF---WGIWTDRYQNI 74 FF+YGT+ ++S +L ++K +IG LM++ + S+ AN R + Sbjct: 21 EFFVYGTMAVYS-LLSQFLANEELSKSQIGILMAILPITSLYANHLNFEIASTIGRVNWL 79 Query: 75 RRIVLLMLTGTLVLSQVVFQANTYEMIYVSILFFYFFQGPLFAESNTMILSYIDGTRHRF 134 +R++L G L +F +++++++ F+F +ES + ++Y + + Sbjct: 80 KRVILF--AGILFWGLFLFDEFYLKLLFMAVFAFFFSAVTPLSESVIVDITY--QMKMNY 135 Query: 135 SSFRLWGSLGWAFTAILAGPVIEWAGVSVL----SYLFAALLCAAMISLIALPRLDHSIG 190 RL+G+ G++FTA+L +I V++ + +F L + + L + Sbjct: 136 GRIRLFGTFGFSFTALLMSGLIRLGFVTIFCTFTTLMFLTFLILNPMKEVELGEEEKRKS 195 Query: 191 IAPLPFKGFRQIFYHPFF---LSFIFFGILVSIPNTMNNTFVSLYITELGGSKTMIGLAV 247 PLP FF L + FGI N N F+ + + E ++ +A+ Sbjct: 196 KKPLP----------TFFWLLLPVVIFGI---AANNFNFVFLPVLMKERNYDVSLASIAL 242 Query: 248 FLSSILEVAVLVLCDRYLKRSIPVLLGWLALVSALFV--LRWWLMADATTPLQVAFIQIL 305 L +I E L+ D +K+ + +G++ L S +FV LR L+ +P + +Q+L Sbjct: 243 SLMAITETPFLLWADEIVKK---LGVGFM-LASGVFVVGLRNLLVTMTGSPAALLMVQLL 298 Query: 306 HCVTFGGFFY 315 T+ +Y Sbjct: 299 QGWTYIVIYY 308 >STM1032 [R] COG5511 Bacteriophage capsid protein Length = 437 Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 17/310 (5%), Positives = 49/310 (15%), Gaps = 34/310 (10%) Query: 18 NFFLYGTVVLFSSFFPLYLQEVGMNKLEIGSLMSVGALVSIIANPF---WGIWTDRYQNI 74 L + V + + + L+ + Sbjct: 21 AGTLNNALAEQI-RARWAEWSVSPDVTGQYTRPVLERLLLRTWLRDGEVFSQMVAGKMPG 79 Query: 75 RRIVLLMLTGTLVLSQVVFQANTYEMIYVSILFFYFFQGPLFAESNTMILSYIDGTRHRF 134 V + + + + L + + ++ Sbjct: 80 LEPVAG--VPFWLEAMEPDYVPMEQTDSTNNLIQGIYFNDWQRPKSYIVCKS--WPGFAT 135 Query: 135 SSFRLWGSLGWAFTAILAGPVIEWAGVSVL----SYLFAALLCAAMISLIALPRLDHSIG 190 + + + A L L +A Sbjct: 136 AMVATKLIDAENMLHLKFTRRLNQARGVTLLAPVIIRLLDLKEYEDSERLAARISAAFAM 195 Query: 191 IAPLPFKGFRQIFYHPFF---LSFIFFGILVSIPNTMNNTFVSLYITELGGSKTMIGLAV 247 + ++ ++ L G + Sbjct: 196 FIRRS----------DAMVQDGDAPDYAD---KDRDLDIEPGTILKDLLPGEDIGTIKSD 242 Query: 248 FLSSILEVAVLVLCDRYLKRSIPVLLGWLALVSALFV--LRWWLMADATTPLQVAFIQIL 305 ++ LE + V + ++ + A +Q Sbjct: 243 RPNANLESFRMGQLRAVAAG---VRGSFS-SIARNYDGTYSAQRQELVEAQEGYAILQDN 298 Query: 306 HCVTFGGFFY 315 Y Sbjct: 299 FIAAVSRPVY 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.144 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,392,114 Number of extensions: 1137967 Number of successful extensions: 2970 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 2972 Number of HSP's successfully gapped: 8 Length of query: 410 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 301 Effective length of database: 25,807,025 Effective search space: 7767914525 Effective search space used: 7767914525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 117 (49.7 bits)