BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0002.p
         (312 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc517 [G] COG0406 Fructose-2,6-bisphosphatase                         49   9e-06
AGc5105 [R] COG3618 Predicted metal-dependent hydrolase of the T...    49   9e-06
AGc5109 [G] COG1879 ABC-type sugar transport system, periplasmic...    49   9e-06
AGc5128 [K] COG1475 Predicted transcriptional regulators               49   9e-06
AGc5121 [J] COG0144 tRNA and rRNA cytosine-C5-methylases               49   9e-06

>AGc517 [G] COG0406 Fructose-2,6-bisphosphatase
          Length = 194

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 3/84 (3%), Positives = 9/84 (10%), Gaps = 7/84 (8%)

Query: 138 IHGVLCDVYGVGMLITGSSGIGKSETALELVKRGHR------LIADDAVEIRQTSDNQLH 191
              +         L             +                             +L 
Sbjct: 8   TGSIGMGKTTTAKLFAEEGVPVLDSDEVVHGLYRAEAVPLIDAAFPGTTISGMVDRQKL- 66

Query: 192 GTAPELIRHLLEIRGVGIINVMTL 215
           G                +  ++  
Sbjct: 67  GDVLRKNPANFNRLEEIVHPLVRN 90


>AGc5105 [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel
           fold
          Length = 194

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 3/84 (3%), Positives = 9/84 (10%), Gaps = 7/84 (8%)

Query: 138 IHGVLCDVYGVGMLITGSSGIGKSETALELVKRGHR------LIADDAVEIRQTSDNQLH 191
              +         L             +                             +L 
Sbjct: 8   TGSIGMGKTTTAKLFAEEGVPVLDSDEVVHGLYRAEAVPLIDAAFPGTTISGMVDRQKL- 66

Query: 192 GTAPELIRHLLEIRGVGIINVMTL 215
           G                +  ++  
Sbjct: 67  GDVLRKNPANFNRLEEIVHPLVRN 90


>AGc5109 [G] COG1879 ABC-type sugar transport system, periplasmic component
          Length = 154

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 138 IHGVLCDVYGVGMLITGSSGIGKSETALELVKRGHR------LIADDAVEIRQTSDNQLH 191
           +H     V G G+L TG SG GKSE A   +    R      LIADD + + +  +  + 
Sbjct: 8   LHATAIVVDGTGILFTGPSGSGKSELAFSFLTEAERCGLPAALIADDQIFVYRDGETII- 66

Query: 192 GTAPELIRHLLEIRGVGIINVMTL 215
              PE I  LLE+RG GI++V ++
Sbjct: 67  AERPEAIAGLLELRGSGIVSVKSV 90


>AGc5128 [K] COG1475 Predicted transcriptional regulators
          Length = 154

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 138 IHGVLCDVYGVGMLITGSSGIGKSETALELVKRGHR------LIADDAVEIRQTSDNQLH 191
           +H     V G G+L TG SG GKSE A   +    R      LIADD + + +  +  + 
Sbjct: 8   LHATAIVVDGTGILFTGPSGSGKSELAFSFLTEAERCGLPAALIADDQIFVYRDGETII- 66

Query: 192 GTAPELIRHLLEIRGVGIINVMTL 215
              PE I  LLE+RG GI++V ++
Sbjct: 67  AERPEAIAGLLELRGSGIVSVKSV 90


>AGc5121 [J] COG0144 tRNA and rRNA cytosine-C5-methylases
          Length = 154

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 138 IHGVLCDVYGVGMLITGSSGIGKSETALELVKRGHR------LIADDAVEIRQTSDNQLH 191
           +H     V G G+L TG SG GKSE A   +    R      LIADD + + +  +  + 
Sbjct: 8   LHATAIVVDGTGILFTGPSGSGKSELAFSFLTEAERCGLPAALIADDQIFVYRDGETII- 66

Query: 192 GTAPELIRHLLEIRGVGIINVMTL 215
              PE I  LLE+RG GI++V ++
Sbjct: 67  AERPEAIAGLLELRGSGIVSVKSV 90


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,468,687
Number of extensions: 957996
Number of successful extensions: 2437
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2437
Number of HSP's successfully gapped: 15
Length of query: 312
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 206
Effective length of database: 26,153,027
Effective search space: 5387523562
Effective search space used: 5387523562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)