BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0001.p (246 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1140 [G] COG3839 ABC-type sugar transport systems, ATPase comp... 311 4e-85 BS_msmX [G] COG3839 ABC-type sugar transport systems, ATPase com... 277 1e-74 TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase comp... 263 3e-70 BS_yurJ [G] COG3839 ABC-type sugar transport systems, ATPase com... 253 3e-67 PM1763 [G] COG3839 ABC-type sugar transport systems, ATPase comp... 247 2e-65 >BH1140 [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 365 Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 154/243 (63%), Positives = 188/243 (77%), Gaps = 5/243 (2%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 +LDRKPKA+SGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLR QMRAEITKL +RL+T Sbjct: 127 MLDRKPKAMSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRVQMRAEITKLHQRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTM RIV+M DG+IQQ SP+E+Y+ P N+FV GFIGSP+MNF+NG Sbjct: 187 TTIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKEVYDFPENVFVGGFIGSPSMNFLNGR 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 L + + N+ +EVP GK +LR GY GKE+I+G+RPEDIH+E +F+E+SP + Sbjct: 247 LE----GSQLKIGNVSIEVPEGKLAVLREHGYEGKELILGIRPEDIHDELLFIESSPGSK 302 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 T+ ++V E G E +LY S L +IARVD RS + G K +LA+DMNK H FD ESE Sbjct: 303 ITAHIEVAELTGAETVLY-SQLSDQEIIARVDSRSDIQSGDKVELALDMNKCHFFDPESE 361 Query: 241 LNV 243 L + Sbjct: 362 LRI 364 >BS_msmX [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 365 Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 142/242 (58%), Positives = 176/242 (72%), Gaps = 5/242 (2%) Query: 2 LDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLETT 61 L RKPKALSGGQRQRVALGRAIVRD +VFLMDEPLSNLDAKLR QMRAEI KL +RL+TT Sbjct: 128 LHRKPKALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEIIKLHQRLQTT 187 Query: 62 CIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGTL 121 IYVTHDQTEA+TM RIVVM DG IQQ +P+++Y P N+FV GFIGSP MNF G L Sbjct: 188 TIYVTHDQTEALTMATRIVVMKDGKIQQIGTPKDVYEFPENVFVGGFIGSPAMNFFKGKL 247 Query: 122 SDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTIF 181 +D G ++ + L VP GK +LR KGYIGKEVI G+RPEDIH+E + +E+ N+ Sbjct: 248 TD--GLIKIGSAAL--TVPEGKMKVLREKGYIGKEVIFGIRPEDIHDELIVVESYKNSSI 303 Query: 182 TSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESEL 241 + ++V E LG E+++Y S + IAR+D R + G + +A DMNK H FD E+E+ Sbjct: 304 KAKINVAELLGSEIMIY-SQIDNQDFIARIDARLDIQSGDELTVAFDMNKGHFFDSETEV 362 Query: 242 NV 243 + Sbjct: 363 RI 364 >TM1276 [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 369 Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 133/244 (54%), Positives = 170/244 (69%), Gaps = 3/244 (1%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKP+ LSGGQRQRVA+GRAIVR+P+VFL DEPLSNLDAKLR QMR+E+ KL RL+ Sbjct: 129 LLDRKPRQLSGGQRQRVAVGRAIVRNPKVFLFDEPLSNLDAKLRVQMRSELKKLHHRLQA 188 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQ EAMTM D+IVVM DG IQQ +P E+YN P N+FVAGFIGSP MNF+N Sbjct: 189 TIIYVTHDQVEAMTMADKIVVMKDGEIQQIGTPHEIYNSPANVFVAGFIGSPPMNFVNAR 248 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + G + +A V+VP L N YI KE+I G+RPEDI+++ L SP Sbjct: 249 VVRGEGGLWIQASGFKVKVPKEFEDKLAN--YIDKEIIFGIRPEDIYDKLFALAPSPENT 306 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 T +VDV E LG E +L++ +G ++A V+ R+ +E K L +DM ++H FDKE+E Sbjct: 307 ITGVVDVVEPLGSETILHVK-VGDDLIVASVNPRTQAKEEQKIDLVLDMTRMHAFDKETE 365 Query: 241 LNVL 244 ++ Sbjct: 366 KAII 369 >BS_yurJ [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 367 Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/244 (53%), Positives = 172/244 (70%), Gaps = 10/244 (4%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LL RKPKALSGGQRQRVALGR+IVR+P+VFLMDEPLSNLDAKLR MR EI+KL +RLE Sbjct: 126 LLKRKPKALSGGQRQRVALGRSIVREPKVFLMDEPLSNLDAKLRVTMRTEISKLHQRLEA 185 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTMGDRIVVM +G IQQ A P ++Y+ P NLFVAGFIGSP MNF+ G Sbjct: 186 TIIYVTHDQTEAMTMGDRIVVMNEGEIQQVAKPHDIYHYPANLFVAGFIGSPGMNFLKGI 245 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHE----EPVFLEAS 176 + G + F ++ + +P KA L+ KGY G+++I GVRPE I + + +F Sbjct: 246 IEQQHGELFFTNSSIRLHIPEEKAKRLKEKGYAGEQMIAGVRPEHITQMTGNDQLF---- 301 Query: 177 PNTIFTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFD 236 +++F + V+V ENLG E+++++ G + R+DG + G +L++ M+ + FD Sbjct: 302 -DSVFQANVEVNENLGSELIVHVMA-GDERLKVRLDGNTRIDAGDSIQLSVKMDHVVFFD 359 Query: 237 KESE 240 E+E Sbjct: 360 AETE 363 >PM1763 [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 368 Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/244 (51%), Positives = 167/244 (68%), Gaps = 4/244 (1%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LL RKPKALSGGQRQRVALGR IVR P+VFLMDEPLSNLDAKLRG MRAEI ++ K L Sbjct: 127 LLSRKPKALSGGQRQRVALGRTIVRSPKVFLMDEPLSNLDAKLRGNMRAEIIRIHKSLHA 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTM DRIVVM G++QQ +P+++YN P NLFVAGFIG+PTMNFI+G Sbjct: 187 TTIYVTHDQTEAMTMADRIVVMKAGVVQQIGTPKQIYNAPNNLFVAGFIGAPTMNFIHGK 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + + G + + +L +P L++ KG+ KE+I+G+RPE+I +P+ L ++I Sbjct: 247 IEN-GQFIAPKGTSL--LIPENHYELIKEKGFENKEIILGIRPENISNDPMLLGVYQHSI 303 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 + ++V E LG E +L+ + + + A V R + LA DM H FD ++E Sbjct: 304 IHAYINVAELLGAEYILH-TDIDGQEIKAIVHSRQNIKMEQVVNLAFDMKYAHFFDPQTE 362 Query: 241 LNVL 244 ++L Sbjct: 363 KSLL 366 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,008,454 Number of extensions: 739844 Number of successful extensions: 4487 Number of sequences better than 1.0e-05: 1564 Number of HSP's gapped: 4201 Number of HSP's successfully gapped: 1638 Length of query: 246 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 142 Effective length of database: 26,383,695 Effective search space: 3746484690 Effective search space used: 3746484690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)