BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5586.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPR088c [U] COG0541 Signal recognition particle GTPase Sce Sacch...    28   3.7  
BS_ydaB [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid...    28   6.7  

>YPR088c [U] COG0541 Signal recognition particle GTPase Sce Saccharomyces
           cerevisiae
          Length = 541

 Score = 28.5 bits (62), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 48  PWTPGSNTNSPGAPVPHTPAPVPVPRRPVVDSRPEVAP 85
           P  PG+N   PG  +P+ P    +P  P +   P+V P
Sbjct: 445 PGAPGANARMPG--MPNMPGMPNMPGMPNMPGMPKVTP 480


>BS_ydaB [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
           Bsu Bacillus subtilis
          Length = 465

 Score = 27.7 bits (60), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 31  GLPSSRGWGSSGHRGNSPWTPGSNTN---SPGAPVPHTPAPVPVP 72
           G+P + G+GS+   G S WTP    +   S G PV      V  P
Sbjct: 296 GIPLAHGYGSTEAWGISTWTPDMGMDKAASAGKPVAGVKVKVEDP 340