BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5553.p         (51 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA1034 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vib...    28   7.3  

>VCA1034 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 666

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 5   ETKKGRRK--TPLFLTHQQATDYSAAAAFAARLGSFS 39
           E K+GR+K  T   +T Q A+D  +A     +LG FS
Sbjct: 457 EAKQGRQKVATTRRITEQLASDMESAVGITHKLGEFS 493