BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5548.p         (68 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP1263_1 [L] COG0550 Topoisomerase IA Spn Streptococcus pneumoni...    27   8.2  

>SP1263_1 [L] COG0550 Topoisomerase IA Spn Streptococcus pneumoniae TIGR4
          Length = 553

 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 19  SKCSTAGPAVDLHRAVAQAAVFETPSSTGLHIE 51
           SK   A  A D H A+  ++VF TP S   +++
Sbjct: 341 SKVKNASGAQDAHEAIRPSSVFNTPESIAKYLD 373