BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5517.p         (95 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4526 [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp p...    32   0.47 
SPBC1347.06c [RTKL] COG0515 Serine/threonine protein kinase Spo ...    28   3.7  
RSc2263 Non COG                                                        28   4.7  
XF0235 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase...    27   7.5  

>PA4526 [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus
           assembly pathway, ATPase PilB Pae Pseudomonas aeruginosa
          Length = 566

 Score = 31.6 bits (70), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 20  PMPRPPETMILAAVSSGRSDLATSRPTKLDLPESATAGMLSTAAEPPCAAGSK 72
           P+ R    M+L A+  G SDL      K+      T GML   A+PP    S+
Sbjct: 183 PVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRFRTDGMLHEVAKPPIQLASR 235


>SPBC1347.06c [RTKL] COG0515 Serine/threonine protein kinase Spo
           Schizosaccharomyces pombe
          Length = 446

 Score = 28.5 bits (62), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 17  SAEP----MPRPPETMILAAVSSGRSDLATSRPTKLDLPESA 54
           SAEP    +P PP           RS LAT++P  +D+ +S+
Sbjct: 365 SAEPNQNSLPNPPTETKATTTVPDRSGLATNQPAPVDVHDSS 406


>RSc2263 Non COG
          Length = 391

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 35  SGRSDLATSRPTKLDLPESATAGMLSTAAEPPCAAGSKPVVRTVMT 80
           SG +D+A + P K+DL  + T G+L+     P  AG    VR V++
Sbjct: 70  SGWTDIALATPQKVDL-LALTNGVLTDLGRAPLPAGQYQQVRLVLS 114


>XF0235 [J] COG0532 Translation initiation factor 2 (IF-2  GTPase) Xfa
          Length = 892

 Score = 27.3 bits (59), Expect = 7.5,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 15  KLSAEPMPRPPETMILAAVSSGRSDLATS-RPTKLDLPESA 54
           ++  EP+PRPP   I+  V  G++ L    R TK+ + E+ 
Sbjct: 384 EVHGEPVPRPPVVTIMGHVDHGKTSLLDYIRRTKIAVGEAG 424