BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5500.p         (34 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4502 [E] COG0747 ABC-type dipeptide transport system, periplas...    29   3.2  

>PA4502 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Pae Pseudomonas aeruginosa
          Length = 531

 Score = 28.9 bits (63), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 3   LRWASSAGCSKVCRWPRLSCAATASGRLRSRW 34
           L WA   G       P LSCAA  SG  ++RW
Sbjct: 426 LGWAGDNGDPDNFLSPNLSCAAAESGENQARW 457