BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5484.p         (74 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0800 [L] COG0587 DNA polymerase III, alpha subunit Rso Ralsto...    28   4.4  
YKR096w Non COG                                                        28   5.3  

>RSp0800 [L] COG0587 DNA polymerase III, alpha subunit Rso Ralstonia
           solanacearum
          Length = 1075

 Score = 28.5 bits (62), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 31  PMKARAESNSVQRAASSRNRKLSQENSASITSSSDGPRPDGDG 73
           PM   + S  VQ A  SR R L  + +AS   S+   RPDG G
Sbjct: 794 PMGFYSPSQLVQEARRSRVRVLPADVTASAWDSTLHARPDGAG 836


>YKR096w Non COG
          Length = 1195

 Score = 28.1 bits (61), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 36  AESNSVQRAASSRNRKLSQENSASITSSS 64
           +E N   R  SS  R L +ENS  IT SS
Sbjct: 105 SEKNPSPRYVSSSKRALKRENSVGITQSS 133