BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.5471.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transd... 296 3e-80 AGl385 [ET] COG0834 ABC-type amino acid transport/signal transdu... 266 5e-71 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 199 6e-51 SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transd... 172 6e-43 AGl667 [ET] COG0834 ABC-type amino acid transport/signal transdu... 159 5e-39 >AGc2586 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 151/270 (55%), Positives = 190/270 (70%), Gaps = 4/270 (1%) Query: 1 MMSIKKVFNAKFLALTLAAACAVATAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAK 60 MMSI + F K +A +A + T SA+AQS+ ++ K+G + IGV+ G PPFGSVDA+ Sbjct: 1 MMSIFQSF--KSVAAAIAVCAGIFTGFSANAQSVDDIVKRGSVKIGVLVGAPPFGSVDAQ 58 Query: 61 GVPIGYDVDVANLIGKYLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLF 120 G P+GYD DVA LIGKYLG+PV +V L PP+RIPALESGKVD L ATLAPTPERAK+V+F Sbjct: 59 GNPVGYDADVATLIGKYLGVPVTMVQLTPPSRIPALESGKVDFLVATLAPTPERAKAVMF 118 Query: 121 TIPYSGFELSIVGPVGSHYKKLDDLVKKKVGVSRGSTNDTAL-TRLAPAGTVLVRFEDDS 179 T PYS F++ I + +K +DL VGV+RGS+ + R G ++RF+DD+ Sbjct: 119 TNPYSAFQVGIYSHKDTKIEKWEDLKGMTVGVNRGSSVEREFVNREKELGLTILRFDDDA 178 Query: 180 TVTQALLSNQVDAISIPNTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLN 239 T QAL S QV AI+ P+ AN +K RG EVKF +S+QPNSMTVRK + +L QWLN Sbjct: 179 TTMQALFSGQVQAIAGPDAQANAAIKLRGDTTTEVKFFFSIQPNSMTVRKDAVDLHQWLN 238 Query: 240 NFIYYVKLNGELDAISRKWAG-PLPNLPVF 268 N IYY+K NGELDAI+RKW G PLP LP F Sbjct: 239 NTIYYIKQNGELDAIARKWVGTPLPVLPTF 268 >AGl385 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 294 Score = 266 bits (679), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 129/237 (54%), Positives = 170/237 (71%), Gaps = 1/237 (0%) Query: 33 SIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGKYLGLPVEIVPLVPPAR 92 S++E+T +GK+ IGV++G PP G VD KG P GYDVDVANLIG YL LPVE+VPL PPAR Sbjct: 58 SLSEITARGKVKIGVLTGAPPMGMVDEKGNPSGYDVDVANLIGSYLSLPVELVPLTPPAR 117 Query: 93 IPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVGSHYKKLDDLVKKKVGV 152 IPAL++GKVD L ATLAPT ERAK+V+FT PYS F + I+ ++ LD L K+V V Sbjct: 118 IPALQTGKVDFLVATLAPTGERAKTVMFTQPYSAFNMDIISGKDQKFENLDSLKGKRVSV 177 Query: 153 SRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRGQGKI 212 +RGS+ +TAL + G +V +EDDST QALL+ QVDA+++P+T+ I+K R + + Sbjct: 178 NRGSSQETALRKANVEGLEIVVYEDDSTSAQALLAGQVDAVALPSTVGEAIIKQRPEAGL 237 Query: 213 EVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLPNLPVF 268 +V F + Q NSM + +EL+QWLN IY +K++G+LD IS KW G PLP LP F Sbjct: 238 QVGFTFFQQGNSMATKIEDFELRQWLNTSIYLMKMSGDLDRISVKWTGRPLPQLPSF 294 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 106/250 (42%), Positives = 152/250 (60%), Gaps = 2/250 (0%) Query: 17 LAAACAVATAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGK 76 L AA A A+AQ++ + G + +G++ PPFG +DA P GYD DVA L+ K Sbjct: 18 LGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPDGYDADVAKLLAK 77 Query: 77 YLGLPVEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVG 136 LG+ V IVP+ P RIP L+S +VD+L A+L T ERAK+V F+ PY+G + + G Sbjct: 78 ELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPYAGISIGVFGAAD 137 Query: 137 SHYKKLDDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSNQVDAISIP 196 K +DL K +GV+R ST DTA T++AP + RF+DD++ QALLS QV+ I + Sbjct: 138 LAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQALLSGQVELIGVS 197 Query: 197 NTMANEIVKSRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISR 256 N +A +I ++ G+ K S Q + VRKGS E+ +++N F+ VK +G+L+AI Sbjct: 198 NVVAAQI-EAAAPGRFNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDKVKADGQLNAIHE 256 Query: 257 KWAG-PLPNL 265 KW G PLP Sbjct: 257 KWLGSPLPEF 266 >SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 265 Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 140/244 (57%), Gaps = 1/244 (0%) Query: 26 AASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGKYLGLPVEIV 85 AA+ASA S+ ++ + K+ IGV PPFG + + P G DVDVA L+ K LG+ +E+V Sbjct: 22 AATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVELELV 81 Query: 86 PLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVGSHYKKLDDL 145 P+ +RIP+L++GKVD + A+ ERA SV F+ PY G I+ P + K L DL Sbjct: 82 PVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKSLADL 141 Query: 146 VKKKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVK 205 K+VGV RG+ ++ L+ G LVRF+DDST AL+S QVDAI N +A ++ + Sbjct: 142 AGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAAQLQE 201 Query: 206 SRGQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLPN 264 E K Y + +R+ +L WLN ++ K +GEL AI KW P+P Sbjct: 202 RYPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKTPIPE 261 Query: 265 LPVF 268 LP F Sbjct: 262 LPSF 265 >AGl667 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 127/231 (54%), Gaps = 1/231 (0%) Query: 28 SASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGKYLGLPVEIVPL 87 ASA ++ E KGK+ IG+ P+G V++ GV G D D+ YLG+ VE VPL Sbjct: 55 DASAATVEEAKAKGKVVIGIQGDNSPWGFVNSSGVQDGLDADIGKAFADYLGVKVEFVPL 114 Query: 88 VPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVGSHYKKLDDLVK 147 RIPAL +GKVD+L AT+A T ERAKS+ ++ PY G S+ GP DDL Sbjct: 115 AVANRIPALLTGKVDVLFATMAMTAERAKSIQYSKPYVGNVFSVYGPKDKKIAGFDDLTS 174 Query: 148 KKVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSR 207 VGV + S DTA+T A + ++RF+DD+ QAL+S QV+A+ N + + Sbjct: 175 LNVGVPKSSAMDTAITAGAGSKANILRFDDDAANIQALISGQVEAVG-GNMFYGDRLNKA 233 Query: 208 GQGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKW 258 +GK E KF + N R G + + +N F+ +K +G+L I KW Sbjct: 234 AEGKYESKFDLTTMYNGAGTRPGEKDWNETINAFLDKIKSDGQLAKIYDKW 284