BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5431.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ECU09g0280 Non COG                                                     31   0.60 
CC1136 Non COG                                                         30   1.3  
CT287 [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridy...    27   9.0  

>ECU09g0280 Non COG
          Length = 352

 Score = 31.2 bits (69), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 4   RPHVLLRCLRTGVGTDRGRQPHHRRNRHDAQALGHLCRAGLDGSGQRRLPGRGDGRHPAQ 63
           R H + R      G DR     H+ ++ D    GH     +  S + R+ G+ + +H  +
Sbjct: 99  RQHSMSRLSLKAAGIDRSVDERHKSSQVDGSGAGHRNDGNILSSDKTRIDGK-ESKHTPE 157

Query: 64  SSPATHRARCHGGHATRGPVGTELRKRWRAFCQVGDHALRRFSPEVFSANSTGV 117
           +S   +        +  GP+  E       FC +      R     F ++S  V
Sbjct: 158 TSEENYYRMMERAFSHFGPLEEE-------FCSIAARQAYRIFSTYFESSSADV 204


>CC1136 Non COG
          Length = 817

 Score = 30.0 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 30  RHDAQALGHLCRAGLDGSGQRRLPGRGDGRHP 61
           R D Q++      GLDG G RR+    DG HP
Sbjct: 285 RDDLQSIYLARNPGLDGDGNRRISKVADGMHP 316


>CT287 [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           Ctr Chlamydia trachomatis
          Length = 358

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 23  QPHHRRNRHDAQALGHLCRAGLDGSGQRR 51
           Q   R  + D  A GH CR G DG+G  R
Sbjct: 110 QKKVRELKGDFLATGHYCRGGADGTGLSR 138