BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5408.p         (100 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3575c [K] COG1609 Transcriptional regulators Mtu Mycobacterium...    29   3.2  
MT3680 [K] COG1609 Transcriptional regulators MtC Mycobacterium ...    28   3.7  
RC0582_2 [J] COG0072 Phenylalanyl-tRNA synthetase beta subunit R...    28   4.1  

>Rv3575c [K] COG1609 Transcriptional regulators Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 359

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 33  QFLQVAAVGAYHHIVDGAFAGMGAAVSGIVVGAGGQ--------YQRRHP--FGGGGGDF 82
           Q LQ+ +VG+   + DG  A +GA V G VV + G          QRR P        D 
Sbjct: 103 QGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDL 162

Query: 83  HGRGRAGM 90
            G  R G+
Sbjct: 163 SGVSRVGI 170


>MT3680 [K] COG1609 Transcriptional regulators MtC Mycobacterium
           tuberculosis CDC1551
          Length = 404

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 33  QFLQVAAVGAYHHIVDGAFAGMGAAVSGIVVGAGGQ--------YQRRHP--FGGGGGDF 82
           Q LQ+ +VG+   + DG  A +GA V G VV + G          QRR P        D 
Sbjct: 148 QGLQLVSVGSSRSLADGTAAVLGAGVDGFVVYSVGDDDPYLQVVLQRRLPVVVVDQPKDL 207

Query: 83  HGRGRAGM 90
            G  R G+
Sbjct: 208 SGVSRVGI 215


>RC0582_2 [J] COG0072 Phenylalanyl-tRNA synthetase beta subunit Rco
           Rickettsia conorii
          Length = 679

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 31  LPQFLQVAAVGAYHHIVDGAFAGMGAAVSGIVVGA-------GGQYQRRHP--FGGGGGD 81
           LP  L + +      I D AF  +G +   +   A        G Y  ++P  FG G   
Sbjct: 432 LPNLLSIVSKNLARSIKDMAFFEVGPSFIDLNTEATYLTAIISGSYNNKNPHSFGRGYDV 491

Query: 82  FHGRGRAGMVADHGGLA 98
           F  +G   +VAD+ GL+
Sbjct: 492 FDLKGDLELVADYAGLS 508