BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5400.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MT1364 [E] COG0346 Lactoylglutathione lyase and related lyases M...    35   0.039
PA4310 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu...    30   1.3  
Rv0990c Non COG                                                        30   1.5  
MT1019 Non COG                                                         30   1.5  
XF1217 Non COG                                                         30   1.6  

>MT1364 [E] COG0346 Lactoylglutathione lyase and related lyases MtC
           Mycobacterium tuberculosis CDC1551
          Length = 152

 Score = 35.0 bits (79), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 34/82 (41%)

Query: 17  DEGVIPLNLADAGLIGLVPLLAPQALGHLVVQIAFPRGDGFQALPIADSDADFFPRRLHA 76
           D+G+    LA  G    + L+AP     ++ +    RG G Q L    SD D   RRL +
Sbjct: 54  DQGIREALLAVPGSAAQIQLMAPLDESSVIAKFLDKRGPGIQQLACRVSDLDAMCRRLRS 113

Query: 77  QKTRLARSCLHHGIGHLAIAMI 98
           Q  RL       G  +  I  I
Sbjct: 114 QGVRLVYETARRGTANSRINFI 135


>PA4310 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 629

 Score = 30.0 bits (66), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 36  LLAPQALGHLVVQIAFPRGDG-FQALPIADSDADFFPRR-------LHAQKTRLARSCLH 87
           LL    LG   +     + DG + A P +D  AD+ PRR         A +T L    + 
Sbjct: 87  LLEQPLLGSTFLFTYLGQTDGTYTARPTSDLPADYDPRRRPWYNAATSAGQTTLTEPYME 146

Query: 88  HGIGHLAIAMIALGAQGSEDDGVIGNVSGDGSTHGVAPV 126
             I  L + + +   QG +  GV+G   GD S   V  +
Sbjct: 147 PAIHELVLTIASPARQGGQPFGVVG---GDLSLQTVVKI 182


>Rv0990c Non COG
          Length = 218

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 7   VRVLDSKLI-----PDEGVIPLNLADAGLIGLVPLLAPQALGHLVVQIAFPRGDGFQALP 61
           VR+L S+L      PD  ++PL+LAD+ L+ LV       +G +V  +A P  D   AL 
Sbjct: 113 VRLLGSRLAESTAGPDARIVPLHLADSALVDLV------RVGDVVDVLAAPVTDSPAALR 166

Query: 62  IADSDA 67
           +  +DA
Sbjct: 167 LLATDA 172


>MT1019 Non COG
          Length = 218

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 11/66 (16%)

Query: 7   VRVLDSKLI-----PDEGVIPLNLADAGLIGLVPLLAPQALGHLVVQIAFPRGDGFQALP 61
           VR+L S+L      PD  ++PL+LAD+ L+ LV       +G +V  +A P  D   AL 
Sbjct: 113 VRLLGSRLAESTAGPDARIVPLHLADSALVDLV------RVGDVVDVLAAPVTDSPAALR 166

Query: 62  IADSDA 67
           +  +DA
Sbjct: 167 LLATDA 172


>XF1217 Non COG
          Length = 84

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 7  VRVLDSKLIP--DEGVIPLNLADAGLIGLV--PLLAPQALGHLVVQIAFPRGDGFQALPI 62
          VR L  + I   D GV  LNL    L GL+  P+L    +G+  + + F RG  F   P 
Sbjct: 6  VRELTVREIESVDGGVYFLNLNYRSLGGLIRAPMLTFFGIGNTAIAVNFGRGSSFYIKPT 65

Query: 63 ADSDA 67
           + D 
Sbjct: 66 LNIDT 70