BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5395.p         (184 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2573 [R] COG2373 Large extracellular alpha-helical protein Yp...    31   1.8  
SPBC1271.06c Non COG                                                   30   4.1  
CC1970 Non COG                                                         29   4.6  
ychG Non COG                                                           29   5.0  
ECs3330_2 [ER] COG0493 NADPH-dependent glutamate synthase beta c...    29   5.3  

>YPO2573 [R] COG2373 Large extracellular alpha-helical protein Ype Yersinia
            pestis
          Length = 2004

 Score = 30.8 bits (68), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 21   ETCGAAWASSSMSIGSTWLQDMSDITRWKVRVAVTGS 57
            E  G+ W S  M  GS+W  D SDI   + RV + GS
Sbjct: 1917 EETGSGWQSPLMVSGSSWYPDYSDIR--EDRVIIYGS 1951


>SPBC1271.06c Non COG
          Length = 146

 Score = 29.6 bits (65), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 125 RLRNS-QMTMKVLSRFRSTAPIFICFMRDIPDNH-----LTLDLPRVY----CSSQDAGC 174
           +L N+ + +++ + RF S  P+FIC +RD   N      +++ L  +        Q A C
Sbjct: 25  KLNNTLKKSLQFIMRFHSYHPMFICLLRDSSRNENRKKKVSIGLRTIMRAFSFLMQVATC 84

Query: 175 GKRYVLPLTC 184
             RY L LTC
Sbjct: 85  LIRYSLILTC 94


>CC1970 Non COG
          Length = 781

 Score = 29.3 bits (64), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 103 RRRRNAWLTAGWVRCRRS-----AAAVRLRNSQMTMKVLSRFRSTAPIFICFMRDIPDNH 157
           +++  AW   G    + S        +R  +    MKVLS     AP+       + D+H
Sbjct: 459 QQKNTAWAVFGQASYKVSDQLSLTGGLRYTDDDKDMKVLSGPNMAAPV------SVSDSH 512

Query: 158 LTLDLPRVYCSSQD 171
           L+ DL   Y  S+D
Sbjct: 513 LSWDLSAFYTVSED 526


>ychG Non COG
          Length = 196

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 92  LRTNKGSSNISRRRRNAWLTAGWVRCRRSAAAVRLRNSQMTMKVLSRFRSTAPIFI-CFM 150
           LR   GS+N S +R+NA+         R  A + L +  +   V + +R +  +     +
Sbjct: 41  LREYYGSANTSTKRQNAY------PVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSML 94

Query: 151 RDIPDNHLTLDLPRVYCSS-----QDAGCGKRYVLP 181
             IPDN +TL     Y           GC + ++LP
Sbjct: 95  ATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLP 130


>ECs3330_2 [ER] COG0493 NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases Ecs Escherichia coli O157:H7
          Length = 479

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 17  CTSRETCGAAWAS------SSMSIGSTWLQDMSDITRWKVRVAVTGSKLAWVCRASWMMP 70
           CT R+  GA          S  ++   W  D+S +T+   RVA+ G+  A +  A  ++ 
Sbjct: 109 CTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIGAGPAGLACADVLIR 168

Query: 71  SARAIGSCRRIAVSVGTMALVLRTNKGSSNISRRRRNAWLTAG 113
           +  A+    R     G +   + + K   ++  RRR  +   G
Sbjct: 169 NGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMG 211