BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5391.p         (55 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy1105 [E] COG0687 Spermidine/putrescine-binding periplasmic pr...    28   3.5  
Rv1204c Non COG                                                        28   4.4  
MT1242 Non COG                                                         28   4.4  

>SPy1105 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Spy
           Streptococcus pyogenes M1 GAS
          Length = 357

 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 8   HEANEYR----CSRPEPAQDLHRHLGIAQPHRGCRSPAPDPARREPRVAPS 54
           HE   Y      +RPE A     ++G A P++  ++  PD  + +P   P+
Sbjct: 274 HEKEAYAFLNFINRPENAAQNAAYIGYATPNKKAKALLPDEIKNDPAFYPT 324


>Rv1204c Non COG
          Length = 562

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 11  NEYRCSRPEPAQDLHRHLGIAQP 33
           +EY C+ PEPA+ +  +L IA+P
Sbjct: 228 DEYLCALPEPARAVVDYLAIAEP 250


>MT1242 Non COG
          Length = 562

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 11  NEYRCSRPEPAQDLHRHLGIAQP 33
           +EY C+ PEPA+ +  +L IA+P
Sbjct: 228 DEYLCALPEPARAVVDYLAIAEP 250