BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5361.p         (431 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1684 [V] COG4167 ABC-type antimicrobial peptide transport syst...    32   2.4  
VNG0172G [L] COG0249 Mismatch repair ATPase (MutS family) Hbs Ha...    32   4.0  

>VC1684 [V] COG4167 ABC-type antimicrobial peptide transport system, ATPase
           component Vch Vibrio cholerae
          Length = 262

 Score = 32.3 bits (72), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 285 RLQPEHATRAIAYQLDALTTFVRLGANGLGD------LVGAQGQCGGVARHVNGDDILGA 338
           R Q +HA + +++ L+A  T   +G NG G       L G     GG  R VNG+ +   
Sbjct: 22  RKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAGMVAPTGGEIR-VNGELLEHK 80

Query: 339 HHASRLAWIRRLNLSASTRACSSSSRVRLGPMAHWPRQYTGS 380
            +++R   IR +    +T   S + R+++G +   P +   S
Sbjct: 81  DYSTRCKLIRMIFQDPNT---SLNPRLQIGTILEGPLKRNTS 119


>VNG0172G [L] COG0249 Mismatch repair ATPase (MutS family) Hbs Halobacterium
           sp. NRC-1
          Length = 863

 Score = 31.6 bits (70), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 136 EGIVFHDHAIREGAGVA--------LIGIADHVFLRGRRTQHGLPLDAGGEGGTAPTAQA 187
           +G+ F  HA+R GA  A          G+ + V  R R          GG+GGT PTA A
Sbjct: 766 DGVAFE-HAVRAGAATASYGVEVARTAGVPEPVVDRARELLDAPATADGGDGGTTPTADA 824

Query: 188 GG 189
            G
Sbjct: 825 NG 826