BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5336.p         (47 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0737 Non COG                                                         30   1.7  
VNG0560C [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubun...    29   2.2  
MK0420 [J] COG2260 Predicted Zn-ribbon RNA-binding protein Mka M...    28   4.8  

>CC0737 Non COG
          Length = 367

 Score = 29.6 bits (65), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 2  KAGQVTFLARQCGHCVGAVAVAHFHRQAPLVDLVEQGGHG 41
          +AGQV  +   C H   A++    HR+A   D VE   HG
Sbjct: 56 RAGQVYAIRDICPHRAAALSAGRLHREADGTDSVECPYHG 95


>VNG0560C [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
          antiporter, MnhD subunit Hbs Halobacterium sp. NRC-1
          Length = 594

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 6  VTFLARQCGHCVGAVAVAHFHRQAPLVDLVEQGGH 40
          V FL+R+ GH +GAVA A      P V LV  G H
Sbjct: 19 VPFLSRRTGHALGAVASA---AVVPYVWLVATGAH 50


>MK0420 [J] COG2260 Predicted Zn-ribbon RNA-binding protein Mka
          Methanopyrus kandleri AV19
          Length = 66

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 4  GQVTFLARQCGHCVGAVAVAHFHRQAP 30
          G+ T    +C HC G + V H HR +P
Sbjct: 12 GEYTLQRDKCPHCGGDLEVPHPHRFSP 38