BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5329.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO0348 [E] COG1027 Aspartate ammonia-lyase Ype Yersinia pestis        30   4.3  
mlr6993 Non COG                                                        28   8.1  
AGc1153 [K] COG2183 Transcriptional accessory protein Atu Agroba...    28   9.1  

>YPO0348 [E] COG1027 Aspartate ammonia-lyase Ype Yersinia pestis
          Length = 478

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 24/106 (22%)

Query: 40  RGRAQDQLGLAAFQAGDGVSLS--------QPGLEFQVQQRRRGAQFLVQGLGHHLRRIV 91
           +G+  DQ  +  FQ G G SL+          GLE    Q+    Q+L      HL +  
Sbjct: 86  KGKCMDQFPVDVFQGGAGTSLNMNTNEVLANIGLELMGHQKGE-YQYL--NPNDHLNKCQ 142

Query: 92  RHQDAHPARQRGQTLLRLRLVRYGITVFASAIVIQQLAQGLAQGLG 137
              DA+P   R             I V+AS + +      L +G G
Sbjct: 143 STNDAYPTGFR-------------IAVYASILKLIDAINQLGEGFG 175


>mlr6993 Non COG
          Length = 323

 Score = 28.5 bits (62), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 1   MRIVQPARQGQLMRGWMVAPHH---RHAAFLQHLATAQVKGGRGRAQDQLGLAA 51
             +  P   G  ++GW++ P H   R    +Q++      GGRG A +QL  AA
Sbjct: 57  FDVTFPGYGGHPIKGWLILPTHHKGRLPLVVQYIGYG---GGRGLAHEQLHWAA 107


>AGc1153 [K] COG2183 Transcriptional accessory protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 854

 Score = 28.5 bits (62), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 39  GRGRAQDQLGLAAFQAGDGVSLSQPGLEFQVQQRRRGAQFLVQGLGHHLRRIVRHQDAHP 98
           G+G+  D+L +   QAG    L    L ++ ++R R      +GLG     I  ++ A P
Sbjct: 161 GQGKMTDELMVKIMQAGTKAELEDLYLPYKPKRRTRAEIARERGLGPLAEAIWENRAADP 220

Query: 99  AR 100
           A+
Sbjct: 221 AK 222