BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5313.p         (124 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ampH [V] COG1680 Beta-lactamase class C and other penicillin bin...    29   2.8  
ZyaiH [V] COG1680 Beta-lactamase class C and other penicillin bi...    29   2.8  
ECs0426 [V] COG1680 Beta-lactamase class C and other penicillin ...    29   2.8  
SMa0298 [R] COG1123 ATPase components of various ABC-type transp...    28   4.6  
YPO0307 Non COG                                                        28   6.4  

>ampH [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Eco Escherichia coli K12
          Length = 385

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 28  PGGRWRKAGDSVVGGMASTRRTVSPSMAFSINSQGMPR-TRPCAGRRPPACRDWTCGGLR 86
           PG   R   DSVV  +AS  + ++  M   +  QG  +   P +   PP  R  T  G  
Sbjct: 71  PGNNVRPQLDSVVR-IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTP 129

Query: 87  MRSPNQGQHTGMPPRTE 103
           +   N   HT   PR +
Sbjct: 130 ITLVNLATHTSALPREQ 146


>ZyaiH [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins EcZ Escherichia coli O157:H7 EDL933
          Length = 385

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 28  PGGRWRKAGDSVVGGMASTRRTVSPSMAFSINSQGMPR-TRPCAGRRPPACRDWTCGGLR 86
           PG   R   DSVV  +AS  + ++  M   +  QG  +   P +   PP  R  T  G  
Sbjct: 71  PGNNVRPQLDSVVR-IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTP 129

Query: 87  MRSPNQGQHTGMPPRTE 103
           +   N   HT   PR +
Sbjct: 130 ITLVNLATHTSALPREQ 146


>ECs0426 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Ecs Escherichia coli O157:H7
          Length = 385

 Score = 28.9 bits (63), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 28  PGGRWRKAGDSVVGGMASTRRTVSPSMAFSINSQGMPR-TRPCAGRRPPACRDWTCGGLR 86
           PG   R   DSVV  +AS  + ++  M   +  QG  +   P +   PP  R  T  G  
Sbjct: 71  PGNNVRPQLDSVVR-IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGARVPTYNGTP 129

Query: 87  MRSPNQGQHTGMPPRTE 103
           +   N   HT   PR +
Sbjct: 130 ITLVNLATHTSALPREQ 146


>SMa0298 [R] COG1123 ATPase components of various ABC-type transport
           systems, contain duplicated ATPase Sme Sinorhizobium
           meliloti
          Length = 604

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 57  SINSQGMPRTRPCAGRRPP-ACRDWTCGGLRMRSPNQGQHTGMPPRTELPASKAACSL 113
           +I S   P   P  GRRP  A    +   +R RS      TG P R+ LPAS AA SL
Sbjct: 499 TITSHARP---PFRGRRPYRASAVPSPAAVRARSAIHAPKTGHPSRSRLPASSAAISL 553


>YPO0307 Non COG
          Length = 84

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 60  SQGMPRTRPCAGRRPPACRDWTCGGLRMRSPNQGQHTGMPPR 101
           ++  PR  PC    PP+C    CG +R+ + N+      P R
Sbjct: 32  NEAYPRGLPCEQPLPPSCNSDYCGYMRVYTKNKKWKNQNPKR 73