BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5311.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XF0669 [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase...    28   5.9  

>XF0669 [C] COG2609 Pyruvate dehydrogenase complex, dehydrogenase (E1)
           component Xfa Xylella fastidiosa 9a5c
          Length = 985

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 6   GKVAVQCLGQGDVLLAAVAGGQLQMQALVQQDFQAQLDAW 45
           G++ VQ LG G +L  A+A  +     L+ QDF    D W
Sbjct: 820 GELRVQLLGSGAILREAIAAAE-----LLHQDFGITADLW 854