BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.5304.p         (45 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PAE0821 [J] COG0215 Cysteinyl-tRNA synthetase Pya Pyrobaculum ae...    28   6.2  

>PAE0821 [J] COG0215 Cysteinyl-tRNA synthetase Pya Pyrobaculum aerophilum
          Length = 474

 Score = 27.7 bits (60), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 13  FTLGAAWFRSPPQW-PGRPRWYCSC 36
           +T G  W+ SP  W PGRP W+  C
Sbjct: 193 WTPGEPWWNSP--WCPGRPGWHLEC 215